Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2322 ATGGAGGATTCAAAATCATTTGGAATAAAGCAAGAAGGGTATCATAATCCTTCATCCATCATGAAAACAGAGGAATTCTCGTTCCGACGCAGCAAAGTGAAGCAAGCATTGATGATATTTCGGAACTTGTTTTCAAAACTCTTTAGCGAGTACAAAACAGATCACTATGATAATGTGAAAGCAAAATTTAAAGCTTTGAGTGATGCTGCAATGTTGATGCAGAGGAAGCATCAATGGGTGAACTGCCAAAAACGGGTGGGACATGTCCCTGGGATTGAAGTTGGAGACCGATTTCAGTATAGGAATGAACTCAATGTCGTCGGCCTCCATCGCCAGTTTGTCAATGGAATCGATTACGTGGGTAAGGGCAAGAACTCTTTAGCCACAAGCATTGTTGTAACCAATCGCTACGATAATGCTAGAAATCATGGTGGTTCATTGGTTTATAGTGGTCAGGGATGGAATCCTAATGTGAAAGGTGGATCTATGCCCCGTGATCAAAAGTTGGCTGGCGGAAATCTTGCTTTGAAGAATAGCATGGATGCTAAGAGTCCTGTGCGGGTTATATTGAAGGTTGATGGAAAATCTGGTGGAGGCATAGAGAAGAAAACCAATGATAAATTCTCATATATATATGATGGATTGTATTTGGTTGAGAAGATGACACAAGAAAGAGGAACTCATGGGAAACTTGTATTCAAGTTTTTGTTGAACAAACTTGGAGAGCTACCTTCAACTTGTGTTCTCCACAAGGATGAGGTTATCAAGAATGTCAATAAATTTGGGCAACTTGATATTTTCACTTTGAGGAAAAGGCTCAAAACTAAAGGTTGTGCAACTAAAAATGATGTTATTATCATGAATGATATCTCCAACGGACAAGAGAAGTTTCCTATTCGAGTCGTTGCATCAACTGATGGTATTAAAATGCCTCCATCTTTTGATTACATAGTAAACAACATTTATGTTGATAGCTTCGAGAAGCGAATGTTATGTGGTTGTGACTGTGTAAATGGATGTGTGGATTGGGAGAAATGTGTCTGTATTGTTAAGAATGGTGGAACAATACCATATGACTCTAAGAAAAGACTTGCTTCTGGATTGGAATCATGTGTTATATACGAGTGCGGCTCTTCTTGCAAGTGTTCCTCGTCTTGCTACAACCGATTAAGTCAACATGGCCTTCAATTCCAACTTGAAATCTTCAACTCCGAATCAAAGGGCTGGGGTGTTAGAACGCGCTCTTTCATTCCTGCTGGAAGCTTTGTTTGTGAGTACATTGGTGAAGTCCATCATCATAGAGAAGCTGGATCTAGGCAAAAAGTTGATAGTTATGTTGTAAATATGGTTGTTGAAAAGGGTTTCATTGATGCTACAAGATGCGGAAACATTGGAAGATTCATAAACCATAGCTGTTCTCCTAATCTTCAAGTCATGGAGGTTATGTATGATGACAATGATAAGAACCTTCCCCATAAAATCTTTTTTGCATTACAGGACATACCTGCTGGAAGAGAGCTGAGTTTTGATTACAACATCTGCAAGCCAAGGGTTATCGGGACTGGCAGCAACATTTGCCAATGTGGTTCGTCCAAATGCGTTGGGCGAATTTACATTTAA 1620 0.3963 MEDSKSFGIKQEGYHNPSSIMKTEEFSFRRSKVKQALMIFRNLFSKLFSEYKTDHYDNVKAKFKALSDAAMLMQRKHQWVNCQKRVGHVPGIEVGDRFQYRNELNVVGLHRQFVNGIDYVGKGKNSLATSIVVTNRYDNARNHGGSLVYSGQGWNPNVKGGSMPRDQKLAGGNLALKNSMDAKSPVRVILKVDGKSGGGIEKKTNDKFSYIYDGLYLVEKMTQERGTHGKLVFKFLLNKLGELPSTCVLHKDEVIKNVNKFGQLDIFTLRKRLKTKGCATKNDVIIMNDISNGQEKFPIRVVASTDGIKMPPSFDYIVNNIYVDSFEKRMLCGCDCVNGCVDWEKCVCIVKNGGTIPYDSKKRLASGLESCVIYECGSSCKCSSSCYNRLSQHGLQFQLEIFNSESKGWGVRTRSFIPAGSFVCEYIGEVHHHREAGSRQKVDSYVVNMVVEKGFIDATRCGNIGRFINHSCSPNLQVMEVMYDDNDKNLPHKIFFALQDIPAGRELSFDYNICKPRVIGTGSNICQCGSSKCVGRIYI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2322 539 SMART G9a_1 82 242 IPR003105 -
Amo12g2322 539 Pfam SET domain 408 512 IPR001214 GO:0005515
Amo12g2322 539 Pfam SAD/SRA domain 86 240 IPR003105 -
Amo12g2322 539 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 536 - -
Amo12g2322 539 SUPERFAMILY SET domain 279 518 IPR046341 -
Amo12g2322 539 SMART set_7 397 518 IPR001214 GO:0005515
Amo12g2322 539 Gene3D - 68 261 IPR036987 -
Amo12g2322 539 SMART preset_2 287 381 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g2322 539 ProSiteProfiles Pre-SET domain profile. 332 394 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g2322 539 Pfam Pre-SET motif 290 389 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo12g2322 539 ProSiteProfiles YDG domain profile. 87 239 IPR003105 -
Amo12g2322 539 SUPERFAMILY PUA domain-like 69 244 IPR015947 -
Amo12g2322 539 Gene3D SET domain 264 517 IPR046341 -
Amo12g2322 539 ProSiteProfiles SET domain profile. 397 512 IPR001214 GO:0005515
Amo12g2322 539 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 18 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2322 Amo-Chr12 104447638 104452226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2322 65 535 Su(var)3-9 homologs AT1G73100 35.352 8.28e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo12g2322 SAD_SRA 2.8e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2322 - K11420 aip:107627681 829.32