Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2300 ATGGAGGGTCATCAACATCATCATCAACAACCACAACAACATCTTCTTCAACAAATTCTTCTACCCCATCATCAACAACAACAACATAATATGATAATAAACGTGGATGGTGGTGGAGGAATTAGTGACAGGTTTCCACAGTGGAGCATACAGGAGACTAAAGAGTTTCTAATGATCCGTGCGGAGCTTGATCAAACTTTCATGGAGACAAAGAGGAACAAGCAATTGTGGGAAGTCATATCCAATAATATGAAGGAAAAGGGTTACCATAGAAGTGCAGAACAGTGCAAGTGCAAATGGAAAAACCTTGTTACCCGCTATAAGGGATGTGAAACAATGGAACCAGAAGCATTGAGACAACAATTCCCATTCTACAATGAAATTCAAGCAATTTTCACATCAAGAAGCATGCAAAGAATGCTTTGGGGTGAAGGTGAAGGAACTTCAAAGAAAGAACAAAACCATGCAACTCTCATCCCGAAGAAGAAGAGAAGAAGAAGAAAACAATGA 510 0.3941 MEGHQHHHQQPQQHLLQQILLPHHQQQQHNMIINVDGGGGISDRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEALRQQFPFYNEIQAIFTSRSMQRMLWGEGEGTSKKEQNHATLIPKKKRRRRKQ* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2300 169 CDD GT1 46 111 - -
Amo12g2300 169 PANTHER - 1 159 - -
Amo12g2300 169 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 159 - -
Amo12g2300 169 MobiDBLite consensus disorder prediction 144 169 - -
Amo12g2300 169 Pfam Myb/SANT-like DNA-binding domain 47 131 IPR044822 -
Amo12g2300 169 Gene3D - 48 109 - -
Amo12g2300 169 ProSiteProfiles Myb-like domain profile. 48 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2300 Amo-Chr12 103821043 103822453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2300 43 155 Trihelix Transcription Factor Family AT5G01380 70.435 3.82e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo12g2300 Myb_DNA-bind_4 3.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2300 - - aip:107628470 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2300 12 103821043 103822453 Amo12g2300 12 103821043 103822453 ECH
Amo12g2300 12 103821043 103822453 Amo02g2531 02 79289301 79290907 hybridization