Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo12g2300 | ATGGAGGGTCATCAACATCATCATCAACAACCACAACAACATCTTCTTCAACAAATTCTTCTACCCCATCATCAACAACAACAACATAATATGATAATAAACGTGGATGGTGGTGGAGGAATTAGTGACAGGTTTCCACAGTGGAGCATACAGGAGACTAAAGAGTTTCTAATGATCCGTGCGGAGCTTGATCAAACTTTCATGGAGACAAAGAGGAACAAGCAATTGTGGGAAGTCATATCCAATAATATGAAGGAAAAGGGTTACCATAGAAGTGCAGAACAGTGCAAGTGCAAATGGAAAAACCTTGTTACCCGCTATAAGGGATGTGAAACAATGGAACCAGAAGCATTGAGACAACAATTCCCATTCTACAATGAAATTCAAGCAATTTTCACATCAAGAAGCATGCAAAGAATGCTTTGGGGTGAAGGTGAAGGAACTTCAAAGAAAGAACAAAACCATGCAACTCTCATCCCGAAGAAGAAGAGAAGAAGAAGAAAACAATGA | 510 | 0.3941 | MEGHQHHHQQPQQHLLQQILLPHHQQQQHNMIINVDGGGGISDRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNNMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEALRQQFPFYNEIQAIFTSRSMQRMLWGEGEGTSKKEQNHATLIPKKKRRRRKQ* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo12g2300 | 169 | CDD | GT1 | 46 | 111 | - | - | |
Amo12g2300 | 169 | PANTHER | - | 1 | 159 | - | - | |
Amo12g2300 | 169 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 1 | 159 | - | - | |
Amo12g2300 | 169 | MobiDBLite | consensus disorder prediction | 144 | 169 | - | - | |
Amo12g2300 | 169 | Pfam | Myb/SANT-like DNA-binding domain | 47 | 131 | IPR044822 | - | |
Amo12g2300 | 169 | Gene3D | - | 48 | 109 | - | - | |
Amo12g2300 | 169 | ProSiteProfiles | Myb-like domain profile. | 48 | 104 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo12g2300 | Amo-Chr12 | 103821043 | 103822453 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo12g2300 | 43 | 155 | Trihelix Transcription Factor Family | AT5G01380 | 70.435 | 3.82e-54 | 172 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Amo12g2300 | Myb_DNA-bind_4 | 3.2e-20 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo12g2300 | - | - | aip:107628470 | 275.789 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo12g2300 | 12 | 103821043 | 103822453 | Amo12g2300 | 12 | 103821043 | 103822453 | ECH | |
Amo12g2300 | 12 | 103821043 | 103822453 | Amo02g2531 | 02 | 79289301 | 79290907 | hybridization |