Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2299 ATGGGCAACTGCTGCCGATCTCCAGCTGCCGTCGCCCGCGAGGACGTGAAATCATCATTCTCCGACCACACCAAAGGAAAACACACCTCCGCAGCCAGCGCCGCCGGAAAACAGAAAAATGCTCCGATCACGGTCCTCGCCGGCGTTCCCAAGGAGAACATTGAGGAGAAGTACCTGGTGGACCGTGAGCTCGGGCGTGGGGAGTTCGGCGTGACGTACCTCTGTATCGACCGGGGATCGAGAGAGCTGCTTGCTTGCAAGAGCATCTCGAAGCGGAAGTTGCGGACGGCGGTGGACGTCGAGGACGTCCGCCGTGAGGTGGCGATCATGCGCCACCTGCCGCGGAGCTCCAGCATCGTGTCGCTTCGTGAGGCGTGCGAGGATGACAACGCCGTGCACCTTGTAATGGAGCTCTGCGAGGGTGGGGAACTCTTTGACAGGATCGTGGCCAGGGGGCGTTACACGGAGCGCGCTGCCGCCGCAGTTGCAAGGACCGTCGTGGAGGTTGTGCAGCTGTGCCATAGGCATGGTGTGATTCACAGGGACCTGAAGCCGGAGAATTTCCTGTTTGCTAATAAGAAGGAGAATTCGCCGCTCAAGGCTATTGATTTCGGGCTTTCCATATTCTTCAAGCCAGGTGAGAAATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGGCCAGAAATAGATATATGGAGTGCAGGAGTGATACTCTACATCTTACTATGTGGCGTTCCCCCGTTTTGGGCTGAATCTGAACAAGGGGTTGCACAGGCTATTCTCAGAGGGCTTATAGATTTCAAACGAGAACCTTGGCCGAGTATTTCAGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAACTTCGACTAACTGCCAAACAGGTGCTTGAGCATCCTTGGATCCAAAATGCTAAGAAGGCTCCAAATATTCCTCTTGGGGATGCTGTAAAATCAAGACTTAAGCAGTTTTCTATGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTGTCCAATGAAGAAGTTGAAGACATCAAAGATATCTTCCAAAAGATGGATACTGATAACGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCAAAATTTCGGATCTCAACTTGCCGAGTCTGAAATTCAGATGCTTCTTGAAGCTGTAAATACTAATGGGAAGGGAACCCTTGACTATGGAGAATTTGTTGCAGTTTCCCTCCATCTAAAAAGGATGGCTAATGATGAGCATCTTCGCAAGGCCTTCTCTTACTTTGACAAGGATGGGAATGGTTATATTGAACCAGACGAGTTACGGAATGCTTTGATGGAAGACGGGACAGATGATTGTGCAGACGTAGCAAATGATATTTTCCAGGAAGTGGACACAGACAAGGATGGACGCATCAGCTATGAAGAATTTGTGGCTATGATGAAAACCGGAACAGATTGGAGAAAAGCATCTAGGCATTACTCACGCGGGAGATTCAACAGCTTGAGCTTAAAGTTGATGAAGGACGGTTCTGTAAATTTAGGAACTGAGCAGTTACTTGTTTGA 1611 0.4854 MGNCCRSPAAVAREDVKSSFSDHTKGKHTSAASAAGKQKNAPITVLAGVPKENIEEKYLVDRELGRGEFGVTYLCIDRGSRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPRSSSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGRYTERAAAAVARTVVEVVQLCHRHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWIQNAKKAPNIPLGDAVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDIFQKMDTDNDGIVSIEELKAGFQNFGSQLAESEIQMLLEAVNTNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGTDDCADVANDIFQEVDTDKDGRISYEEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSVNLGTEQLLV* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2299 536 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Amo12g2299 536 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Amo12g2299 536 CDD STKc_CAMK 57 315 - -
Amo12g2299 536 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Amo12g2299 536 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Amo12g2299 536 ProSiteProfiles cAMP/cGMP binding motif profile. 66 121 IPR000595 -
Amo12g2299 536 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2299 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 513 - -
Amo12g2299 536 Pfam Protein kinase domain 60 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2299 536 MobiDBLite consensus disorder prediction 16 36 - -
Amo12g2299 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Amo12g2299 536 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Amo12g2299 536 Gene3D Phosphorylase Kinase; domain 1 59 143 - -
Amo12g2299 536 SUPERFAMILY EF-hand 345 523 IPR011992 -
Amo12g2299 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 513 - -
Amo12g2299 536 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Amo12g2299 536 SMART efh_1 363 391 IPR002048 GO:0005509
Amo12g2299 536 SMART efh_1 399 427 IPR002048 GO:0005509
Amo12g2299 536 SMART efh_1 435 463 IPR002048 GO:0005509
Amo12g2299 536 SMART efh_1 471 499 IPR002048 GO:0005509
Amo12g2299 536 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Amo12g2299 536 Pfam EF-hand domain pair 434 497 IPR002048 GO:0005509
Amo12g2299 536 Pfam EF-hand domain pair 362 422 IPR002048 GO:0005509
Amo12g2299 536 Gene3D - 325 500 - -
Amo12g2299 536 SUPERFAMILY Protein kinase-like (PK-like) 56 322 IPR011009 -
Amo12g2299 536 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2299 536 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Amo12g2299 536 CDD EFh 435 497 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2299 Amo-Chr12 103752767 103758490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2299 36 529 EF-hand Containing Proteins AT1G74740 71.053 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo12g2299 Pkinase 6.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2299 K13412 - gmx:100783922 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2299 12 103752767 103758490 Amo12g2299 12 103752767 103758490 ECH