Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2289 ATGGAAATGGGTTCGAGCCCCCGCACCGTTGAAGAAATCTTCAAGGATTACTCTTCTCGCAGAACCGCCATCGTTCGCGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGCGATCCAGAAAAGGAGAACTTGTGCCTTTACGGACATCCAAATGAGTCCTGGGAAGTGACCCTGCCAGCTGAGGAAGTTCCACCAGAGCTTCCAGAGCCGGCTCTGGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGATTGGCTTTCTCTAGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCAGTTGCCTTTTATCTTGGAGCCCGACTTAACCGCAATGAGAGGAAGCGTTTGTTTAGCTTGATCAATGATCTTCCAACTGTTTTTGAAGTTGTAACTGAAAGGAAACCAGTAAAGGACAAGCCAGCTGCAGACAGTGGAAGCAAATCGCGGGGCAGCACAAAGAGATCAAGTGACGGGCAAGTCAAAAGCAACCCGAAGTTCGATGAGGGTTATGAGGAGGAAGACGAYGAGCACAGCGAAACTCTTTGTGGGAGCTGCGGCGGAAACTACAACGCGGACGAATTTTGGATTGGGTGCGACATATGCGAGAGGTGGTTCCATGGAAAATGTGTGAAGATCACACCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGAAGGGGCAGGCCTTGA 714 0.4916 MEMGSSPRTVEEIFKDYSSRRTAIVRALTQDVDEFYGLCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPAADSGSKSRGSTKRSSDGQVKSNPKFDEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRGRP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2289 237 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
Amo12g2289 237 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Amo12g2289 237 CDD PHD_AL_plant 184 234 IPR044104 -
Amo12g2289 237 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Amo12g2289 237 PANTHER CPG BINDING PROTEIN 3 233 IPR045104 GO:0006355|GO:0042393
Amo12g2289 237 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 233 - -
Amo12g2289 237 MobiDBLite consensus disorder prediction 138 173 - -
Amo12g2289 237 MobiDBLite consensus disorder prediction 148 162 - -
Amo12g2289 237 Pfam PHD-finger 185 233 IPR019787 -
Amo12g2289 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Amo12g2289 237 SMART PHD_3 184 232 IPR001965 -
Amo12g2289 237 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2289 Amo-Chr12 103300493 103304659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2289 5 236 Alfin-like Transcription Factor Family AT5G05610 78.298 3.49e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo12g2289 Alfin 3.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2289 - - gmx:100793126 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2289 12 103300493 103304659 Amo12g2289 12 103300493 103304659 ECH
Amo12g2289 12 103300493 103304659 Amo02g2526 02 79072756 79076949 hybridization
Amo14g2749 14 117945490 117949932 Amo12g2289 12 103300493 103304659 PCT
Amo04g1684 04 80169270 80173785 Amo12g2289 12 103300493 103304659 PCT
Amo12g2289 12 103300493 103304659 Amo14g2749 14 117945490 117949932 PCT
Amo12g2289 12 103300493 103304659 Amo04g1684 04 80169270 80173785 PCT