Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2285 ATGGGTGTGGACTACTACAAAATTCTACAGGTAGATCGAGGTGCGAAAGATGATGATCTCAAGAAAGCGTATCGGAAGCTTGCAATGAAGTGGCACCCTGACAAGAACCCTAATAACAAGAAGGAAGCTGAAGCCAAATTCAAGCAAATCTCTGAAGCCTATGATGTGTTGAGTGATCCACAAAAACGAGCAGTGTATGATCAGTATGGAGAGGAGGGATTGAAGGGGCAGGTGCCACCCCCAGGAGCTGGTGGATTTTCTGCCGCAGATGGTGGGCCAACGACGTTCCGGTTCAACCCCAGAAGTGCTGATGATATTTTCTCGGAGTTTTTTGGGTTTTCAAGCCCCTTCGGTGGAATGGGTGATATGGGCGGCCGTCCAGGTGCATCTGGATTTCCCAGGGGCATGTTTGGTGATGATATCTTCACTTCGTTTAGGCATCCAGCTGGAGAAGGCTCTACCAATATGCCAAGGAAAAGTGCACCGATCGAGAGAACATTGCAGTGCAGTTTGGAGGATTTGTACAAAGGGACCACCAAGAAAATGAAGATCTCCAGGGATGTTACAGATGCCAGCGGGAGAGCCACCACAGTAGAGGAAATTCTGACAATCGAGATCAAGCCAGGTTGGAAGAAGGGAACAAAAATAACTTTCCCGGAGAAGGGGAATGAACAGCGAGGAGTTATACCGGCTGACCTAGTTTTCATTATTGATGAGAAGCCTCATAGCCTCTTCAAAAGAGATGGCAATGATCTTGTTGTGACGCAGAAGATTTCTCTAGTAGAAGCTCTCACGGGTTACACGGCGCAACTGACAACCCTTGACGGGCGAAGCATCTCCGTCCCCATCAACTCCATCATTAGTCCCTCATATGAAGAAGTAGTCAAAGGCGAGGGCATGCCAATCCCCAAAGAACCTTCCAAAAGGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCATCGAGGCTTACGTCCGAGCAAAAAGCCGGCATTAAGCGGTTATTGACCTCTCCATAA 1020 0.4794 MGVDYYKILQVDRGAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFSAADGGPTTFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRPGASGFPRGMFGDDIFTSFRHPAGEGSTNMPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDASGRATTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRSISVPINSIISPSYEEVVKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKAGIKRLLTSP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2285 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Amo12g2285 339 Gene3D DnaJ domain 3 121 IPR036869 -
Amo12g2285 339 CDD DnaJ 4 59 IPR001623 -
Amo12g2285 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Amo12g2285 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Amo12g2285 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Amo12g2285 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Amo12g2285 339 Gene3D - 162 240 - -
Amo12g2285 339 CDD DnaJ_C 161 324 - -
Amo12g2285 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 242 IPR008971 GO:0006457|GO:0051082
Amo12g2285 339 Gene3D - 242 322 - -
Amo12g2285 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Amo12g2285 339 MobiDBLite consensus disorder prediction 73 93 - -
Amo12g2285 339 Pfam DnaJ C terminal domain 163 321 IPR002939 -
Amo12g2285 339 SMART dnaj_3 3 62 IPR001623 -
Amo12g2285 339 Pfam DnaJ domain 4 67 IPR001623 -
Amo12g2285 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Amo12g2285 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Amo12g2285 339 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 337 - -
Amo12g2285 339 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2285 Amo-Chr12 103278590 103282497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2285 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.93e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2285 K09510 - nnu:104602593 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2285 12 103278590 103282497 Amo12g2285 12 103278590 103282497 ECH
Amo12g2285 12 103278590 103282497 Amo02g2525 02 79067364 79071151 hybridization
Amo14g2748 14 117864781 117868430 Amo12g2285 12 103278590 103282497 PCT
Amo04g1683 04 80155298 80158704 Amo12g2285 12 103278590 103282497 PCT
Amo12g2285 12 103278590 103282497 Amo14g2748 14 117864781 117868430 PCT
Amo12g2285 12 103278590 103282497 Amo04g1683 04 80155298 80158704 PCT