Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2279 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCTTGAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTCGATCATTCACACCCCTGCTGTCCAAGCAAAACAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCC 489 0.4397 MDHSTSDCQLNPGEVDYEFESNEVLEPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKTEMLKQHRELSMSIRRTIENNEEA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2279 163 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 32 148 - -
Amo12g2279 163 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo12g2279 163 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 32 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2279 Amo-Chr12 103212654 103213600 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g2279 FAR1 1.6e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2279 - - adu:110280446 318.546