Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2273 ATGGGGTCTAGGAGCCATGAAGAATCACCATGGCTATTGGAAAATGGGAATCCAAAGGTGTTGACCAAGGATATGAGACATGGAAGAACAGCACACAACATGTCATCATCTTCTTTGAGGAAAAAATCTGAACTCACTGTTATTTCAAAGGTTCCCTATGGATTCCTCAGAAACTTTCTTGCTAACTTGCAAGAGGTTTTTCTTGGAACCAAGCTTTTCATTCTCTTCCCATCAATTCCTCTTGCTATCATTGCCCATTGTTTTGGTTTTGCAAGACCATGGGTTTTTGCCATGAGCTTACTTGGTTTAACCGTACTTGCTGAAAGAGTCAGCTTCATGACTGAGCAAGTCGCTTGTTACACCGGTCCCACAGTTGGAGGACTTCTGAATGCTACATGTGGGAATGCAACAGAGCTTATCATAGCAATTTTTGCACTTAGTAACAACAAAATTGCTGTGGTCAAGTATTCTCTTCTTGGTTCTATACTTTCAAACCTTCTTTTGGTTCTTGGCACTTCCCTACTTTGTGGTGGCATTGCAAATCTTAGGCAGGAACAAAAATATGAGAGAAGGCAAGCTGATGTGAACTCTCTTATGCTGCTTCTGGGATTGTTGTGCCACATGCTCCCACTGCTGTTCAGATATGGCGGCGGCTCACCGGCTGTGGTGGCCGAGGCATCCTTGAATGTGTCTAGAGCTGCTAGCCTTGTGATGTTGTGTGCTTACTGTGCTTACATTGCCTTCCAACTTTGGACTCACCGGCAACTATTCGAAGCACAAGTAGATAATGATGATGAAGGTCAAAATGATTCAGAAGAAGCAGTGATAGGTTTCTGGAGTGGGATTGGTTGGCTTGTTGGAATGACTGCAATTATGGATCTCTTGTCTGAATATGTGGTGCAGACTATAGAGGATGCATCAAATTCATGGGGTTTGTCTGTGAGTTTCATCAGCATAATCTTGCTCGCAATCGTTGGCAATGCCGCCGAACATGCTGGAGCTATCATATTTGCTTTCAAGAACAAACTGGACATCACATTAGGTGTTGCTTTGGGGTCTGCAACTCAGATTAGCATGTTTGTGGTTCCAGTGTGTGTGATTGTTGGTTGGATTCTTGGCATAAAAATGGACCTCAACTTCAACCTCTTGGAGACAGGTTCTCTTGCTTTGGCAATAATTGTCACAGCCTTTACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCCTTCTATGCTACATTGTTATTGGGGCCTGCTTTTTCGTTCAGACAACACCCTCTGATCAACTTAATGATGAAGTTCATAATGTGATGCTTAAACCAGCAACCGATGCAGTTTTTAGAGCTTAA 1359 0.4297 MGSRSHEESPWLLENGNPKVLTKDMRHGRTAHNMSSSSLRKKSELTVISKVPYGFLRNFLANLQEVFLGTKLFILFPSIPLAIIAHCFGFARPWVFAMSLLGLTVLAERVSFMTEQVACYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRQEQKYERRQADVNSLMLLLGLLCHMLPLLFRYGGGSPAVVAEASLNVSRAASLVMLCAYCAYIAFQLWTHRQLFEAQVDNDDEGQNDSEEAVIGFWSGIGWLVGMTAIMDLLSEYVVQTIEDASNSWGLSVSFISIILLAIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQISMFVVPVCVIVGWILGIKMDLNFNLLETGSLALAIIVTAFTLQDGTSHYMKGLVLLLCYIVIGACFFVQTTPSDQLNDEVHNVMLKPATDAVFRA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2273 452 Gene3D - 123 423 IPR044880 -
Amo12g2273 452 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 5 437 - -
Amo12g2273 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 5 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Amo12g2273 452 Pfam Sodium/calcium exchanger protein 94 251 IPR004837 GO:0016021|GO:0055085
Amo12g2273 452 Pfam Sodium/calcium exchanger protein 282 419 IPR004837 GO:0016021|GO:0055085
Amo12g2273 452 TIGRFAM caca2: calcium/proton exchanger 58 424 - -
Amo12g2273 452 TIGRFAM cax: calcium/proton exchanger 78 424 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2273 Amo-Chr12 102996763 103002319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2273 10 433 Antiporters AT2G38170 70.046 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2273 K07300 - gmx:100782052 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2273 12 102996763 103002319 Amo12g2273 12 102996763 103002319 ECH
Amo14g2732 14 116476493 116481647 Amo12g2273 12 102996763 103002319 PCT
Amo04g1673 04 79815258 79820405 Amo12g2273 12 102996763 103002319 PCT
Amo12g2273 12 102996763 103002319 Amo14g2732 14 116476493 116481647 PCT
Amo12g2273 12 102996763 103002319 Amo04g1673 04 79815258 79820405 PCT