Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2271 ATGAATCAATTGGGAAGTAGAAGTCAAGCTTCTCCATCTTCAACAAACAAGAAGAAGATTGAGAGAAGGGTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTCTACTCCAAACTCAACTCTCTTCTCCCTAGGCCCAAGGAACCGTTGCCATTGCCTGATCAAGTGGACAAGGCCATAAACTACATAAAGAGCTTGGAGGAGAAGGTGAAGATGGCTAAGGAGAAGAGAGAGAGGTCATTGGGAATGGAAATCCGAAGAAAGAGGACACGTGGTGATTGCAGCGGTGTTGATCGCCAAAAACCGCCACAACTTGAGGTTCATGAAATAGGTTCGTGTGTTGAAATTGAAATGACATGTGGATTAGATACTCAGTTCATATTCTATGAAATCATTCGTATTCTGAATGAAGAGAATATTGATGTCAATAGTGTCAATTCCTCACTCATCGAGAATTCCATGTATCATATTCTTCGGGCAGAGATTTCACCGTCTTTGCTTCAATTCGGTGTGACTAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGAACCAACCAGTGAAATTGAATTACAATCTGATTATCAGTTGTTGGATTTTGAGATTGATACTGATGAATTAGCGGAGCTTTTAGATTTTTTAGAAGAGAAATAA 657 0.3942 MNQLGSRSQASPSSTNKKKIERRVIEKNRRNHMKMLYSKLNSLLPRPKEPLPLPDQVDKAINYIKSLEEKVKMAKEKRERSLGMEIRRKRTRGDCSGVDRQKPPQLEVHEIGSCVEIEMTCGLDTQFIFYEIIRILNEENIDVNSVNSSLIENSMYHILRAEISPSLLQFGVTKVSERLKRFVNEPTSEIELQSDYQLLDFEIDTDELAELLDFLEEK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2271 218 SMART finulus 23 73 IPR011598 GO:0046983
Amo12g2271 218 Gene3D - 8 94 IPR036638 GO:0046983
Amo12g2271 218 MobiDBLite consensus disorder prediction 1 15 - -
Amo12g2271 218 Pfam Helix-loop-helix DNA-binding domain 19 68 IPR011598 GO:0046983
Amo12g2271 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 67 IPR011598 GO:0046983
Amo12g2271 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 190 IPR015660 GO:0003700|GO:0006357
Amo12g2271 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 79 IPR036638 GO:0046983
Amo12g2271 218 Coils Coil 57 84 - -
Amo12g2271 218 MobiDBLite consensus disorder prediction 1 23 - -
Amo12g2271 218 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2271 Amo-Chr12 102966263 102967880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2271 12 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.225 2.75e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g2271 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2271 - - gmx:100817883 218.394