Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2260 ATGTCTTCAATAACAATGACAACGGTTGCATCTTCCTTTATTGGAACACGTTTACCAGAGTCATATGCCAGTTCAGGTAGAGTACAAGCCCGATTTGGCTTTGGATCTAAGAAAAGTAGTCCGGCCAAAAAAGGTTCTAGACAACCCACTTCAGATAGGCCGCTCTGGTACCCTGGTGCAAAGGCACCAGAGTATCTAGATGGTAGCCTCGTAGGTGATTATGGGTTCGATCCATTTGGCCTAGGAAAGCCGGCAGAGTATCTCCAGTTTGACCTAGACTCCCTTGATCAGAACTTAGCGAAGAACGTTGCAGGTGACGTGATTGGGACGAGGACGGAAGTGGCAGACGTGAAGGCAACGCCATTTCAGCCATACAGTGAGGTTTTTGGACTCCAAAGGTTCAGGGAGTGTGAACTCATACATGGAAGGTGGGCTATGTTGGCCACTCTTGGTGCTCTCACAGTAGAATGGCTCACCGGTATTACATGGCAGGATGCTGGCAAGGTGGAGCTAATAGAAGGGTCACAATACCTAGGTCAACCACTTCCATTCTCACTTACCACATTGATTTGGATTGAAGTTCTAGTGATTGGATACATAGAGTTCCAGAGGAATGCAGAGCTTGACCCAGAGAAGAGGCTTTACCCAGGTGGTAAGTTCTTTGACCCATTGGGCCTTGCTGAAGACCCTGAGAAGAAGGCCACGCTTCAATTGGCTGAGATCAAACATGCTCGCCTTGCTATGGTTGCCTTTTTGGGCTTTGCTGTCCAGGCTGCTGTAACTGGGAAAGGCCCACTTAACAATTGGGCTACTCATTTGAGTGACCCACTTCACACTACCATCATTGACGCCTTCTCTTCCTCTTCTTGA 870 0.4816 MSSITMTTVASSFIGTRLPESYASSGRVQARFGFGSKKSSPAKKGSRQPTSDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRTEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELIEGSQYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDAFSSSS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2260 289 Pfam Chlorophyll A-B binding protein 62 258 IPR022796 -
Amo12g2260 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 288 IPR001344 GO:0009765|GO:0016020
Amo12g2260 289 SUPERFAMILY Chlorophyll a-b binding protein 48 286 - -
Amo12g2260 289 MobiDBLite consensus disorder prediction 33 57 - -
Amo12g2260 289 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 6 288 - -
Amo12g2260 289 Gene3D Chlorophyll a/b binding protein domain 56 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2260 Amo-Chr12 102811844 102814164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2260 14 288 Chloroplast and Mitochondria Gene Families AT3G08940 84.058 1.23e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2260 K08915 - rcu:8267514 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2260 12 102811844 102814164 Amo12g2260 12 102811844 102814164 ECH