Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2250 ATGGGAATGGAAGATGATGAGGTTGAGGTAGCTGGAGGACAGCAAAGTGTTGAGAATGAAATGGACGTGGCTGAAGTTGTGACAATAATGGCTGGTGATTTTTTGCGAATGGAGTTCAACAATCCTAAGGAAGCTGCTCGTATATATGAAGAGTACAGCCGGGTGAAGGGTTTTGCTGTTCGACAAGGTAAGAAGATAAAAAACAAGAGAGGGAAATTTGTGCAGATTACGTATTTGTGCAATAGAGAAGGTTTTCGGGACAAGAAATGGTTAGAAAAGCAGGATCGCAAAAGAGAGCACAAGGTTGTCACCCGTTATGGGTGTCCTGCCGAGATGCGGATAAAGCCAAGGATTGGAACGGGAAAGTGGTTTGTGGCACGTTTTGTGGATGACCATAACCATGATCTTTTGCCTCAAAAGTTTGTGGAGTACTTGCCTGCGCACAGGAGGAGATGGCATAAGCATAAAATTCTTTAA 477 0.4382 MGMEDDEVEVAGGQQSVENEMDVAEVVTIMAGDFLRMEFNNPKEAARIYEEYSRVKGFAVRQGKKIKNKRGKFVQITYLCNREGFRDKKWLEKQDRKREHKVVTRYGCPAEMRIKPRIGTGKWFVARFVDDHNHDLLPQKFVEYLPAHRRRWHKHKIL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2250 158 Pfam FAR1 DNA-binding domain 48 138 IPR004330 -
Amo12g2250 158 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 10 151 - -
Amo12g2250 158 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 10 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2250 Amo-Chr12 102481281 102483644 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g2250 FAR1 5.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2250 - - ahf:112750035 331.643