Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2237 ATGACTCGCTGTAGTGCTCCGCCCTCATCATCGCCGCCGAGGCCAACACCTATTCCGGCCAAATTCTGGCGTGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTAGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTTTTTCGCGGACCCTAAGACCGACGAGGTCTTCCTCAAGATTCTTCTCCTTCCTGTCACCGATGGATCCGCTCAGGATTTTCTTCCACCTGCCGTGGCCGCCGAAGGCAGCGGCAACGGCAATGGTGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAACAATGGCGGAGGGTTTTCGGTGCCGAGATTCTGTGCGGACTTGATCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTTCGCCACATCTACCGCGGGACGCCGAGACGGCACCTCTTCACTTCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCTGGCGATACTGTGGTCTTCATGAAGGACTCCGATGGCAGGATGTTTGTCGGAATCCGCCGCAATATGTCGTCAGACGACGGTATCTCAGACGGCGGATTGGATTGGTTAGCAACGATAGTTGGGATGGACGAGGGGGAAAAGGAAAAAGAAGAGAAAAATGAAGAGGTGATAATGGAAGGGTTTGCAAGAAACGGGAAGGGGAGGGTGAGTTCGGCTTCAGTGGCGGAGGCGATGGAGCTGGCGGCCCAGAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTAAAGGCAGAGGATGTAGACGTGAAGATGAATGGTATTTTCTGCAGTGTTGGGATGAGAGTGAAGATGGCCAGAGAGAACTACGATTCTTCACGGATGACTTGGTTTCAGGGAACAGTTTCTGGTGTTACTGTTCCCGGTGAAGCTCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCTGAAATCTTGAAGAATGTAAGTCCCGTTAGTCCATGGCAGGTGGAGTTTCTTTCTGACACACCTTCACTTCCTCAAGTATTTCCCCCGACAAAAAAATTCAGAATTGCAGACGGTTCTTCTAAAATTTTCAGTCATGAAGTGGAAGAATCTTCCTTTTCCATGACAAGACTTGCTATTCCTGATTTAGCAATGGGAGTGCTGAATCAAACATTGTTGATGAGTAATTATGGCACCCCTTTTCCTGCTAGCATTCAGGGAGTCAGGCATCCTCTACTTTCTGCACCTACTTGTCCCATTTTTCCGATTAATCCTCCTCTGTCTATTGCTAACTCCTTTAAGAATAACATTAGACCAAGCAACTCAACCAAATCTGGGACTGCTTCTTTTCAACTATTTGGTTGTACTATTCAAACAGATCAAGAAATTGATGACCAATTGATGACCATAGCACCGCTAAAAATGACGCAGGAAAAGACAACGTATAATAGAGGCATTGACAAACCAATTACATAG 1635 0.4942 MTRCSAPPSSSPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNFFADPKTDEVFLKILLLPVTDGSAQDFLPPAVAAEGSGNGNGDDEKVESYAKILTRSDANNGGGFSVPRFCADLIFPPLNFEEDPPVQTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGIRRNMSSDDGISDGGLDWLATIVGMDEGEKEKEEKNEEVIMEGFARNGKGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNGIFCSVGMRVKMARENYDSSRMTWFQGTVSGVTVPGEAQPWSGSPWRMLQITWDESEILKNVSPVSPWQVEFLSDTPSLPQVFPPTKKFRIADGSSKIFSHEVEESSFSMTRLAIPDLAMGVLNQTLLMSNYGTPFPASIQGVRHPLLSAPTCPIFPINPPLSIANSFKNNIRPSNSTKSGTASFQLFGCTIQTDQEIDDQLMTIAPLKMTQEKTTYNRGIDKPIT* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2237 544 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 492 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g2237 544 CDD B3_DNA 125 226 IPR003340 GO:0003677
Amo12g2237 544 Gene3D - 322 395 - -
Amo12g2237 544 Pfam Auxin response factor 283 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo12g2237 544 Gene3D - 123 228 IPR015300 -
Amo12g2237 544 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Amo12g2237 544 PANTHER AUXIN RESPONSE FACTOR 12 492 - -
Amo12g2237 544 SUPERFAMILY DNA-binding pseudobarrel domain 122 228 IPR015300 -
Amo12g2237 544 SMART B3_2 126 228 IPR003340 GO:0003677
Amo12g2237 544 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2237 Amo-Chr12 102105062 102107991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2237 23 463 B3 DNA Binding Superfamily AT1G77850 47.778 3.50e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo12g2237 B3 6.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2237 - - adu:107475253 979.548