Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2231 ATGGCTCGAACTCCAACAATAGTTGCAGCAACAACAATCACACTATCTCGCTCAGATGCAACACAACGACGATGTTTCAACGTACCGCAGTTTCAAACTATGGAACGAGCATCAGCTCCAGCAACAACATCACGTGATAGCACATCACCATCAATCACGTCCTCTCTTCCACCGAGATCTCTACTCGTCGGTTATTGCGCTTGGCATAGCGTCAGTAGAGCATCTGATGAGCAGTCTCTGTCGAGATCGGCGGTTATGGCAATGCGGTCTGCTACGGCGGGAGAAGTCGGAGGAGCAGGAAGCAGAACAACTGGAATAAACTGTCAAGATTGCAGGAACCAGGCGAAGGAAGACTGCCCTCACATGAGGTGCAGGACTTGTTGCAAGAGTCGTGGGTATGAGTGCAAGACCCACATGAAGAGCACGTGGGTCCCAGCCGCTAAGCGTCGCAAGCGCCAACAGCAGTTAATGGCGCTTCAGGATCACTAA 489 0.5153 MARTPTIVAATTITLSRSDATQRRCFNVPQFQTMERASAPATTSRDSTSPSITSSLPPRSLLVGYCAWHSVSRASDEQSLSRSAVMAMRSATAGEVGGAGSRTTGINCQDCRNQAKEDCPHMRCRTCCKSRGYECKTHMKSTWVPAAKRRKRQQQLMALQDH* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2231 162 Pfam Domain of unknown function (DUF702) 105 161 - -
Amo12g2231 162 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Amo12g2231 162 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 54 160 IPR007818 GO:0003700|GO:0006355
Amo12g2231 162 MobiDBLite consensus disorder prediction 36 55 - -
Amo12g2231 162 PANTHER PROTEIN SHI RELATED SEQUENCE 7 54 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2231 Amo-Chr12 101899652 101900140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2231 101 162 C2H2 Transcription Factor Family AT1G75520 74.194 2.79e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo12g2231 DUF702 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2231 - - ahf:112720334 165.236