Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2224 ATGTATGCAACTATTGCCTATAGCTTATTAGAAGAAGAAGAAGAAATGAACAGGGGAATTGAAGTTCTGTCTCCGGCTTCTTACCTTCACAACTCAAATTGGTTGTTCCAAGAGAGTGCAGGAACCAAATGGACACCACAAGAGAACAAGCAATTTGAGAACGCTTTGGCGCTCTTCGACAAGGAGACGCCGGACCGGTGGCTGAAGGTGGCGGCTATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTATAGGGAGTTAGTTGAAGATGTTAATGTAATTGAATCTGGGTTCATACCAATTCCAGGGGGAACTACTGATGGTTCTTTCACATTGGAGTGGGTTGATAATCATGAATTTGATGGGTTTAAGCAATTCTATGGTGTTGGTTGCAAAAGGGGTTCTTCCACTAGGCCTTCTGAACAAGAAAGGAAGAAAGGTGTACCATGGACGGAAGAAGAGCACAGGCTATTTTTGATGGGTTTGAAGAAGTATGGTAAAGGTGATTGGAGAAATATATCTCGAAATTTTGTTACAACAAGGACGCCGACGCAAGTTGCAAGTCATGCTCAGAAATACTTTATCCGGCAACTTAACGGCGGCAAGGATAAGCGGAGATCCAGTATCCATGATATCACAATGGTTAATCTCCCTGAAACAAAGTCGCCTTCGTCGGAAAGTAACAAACCTCCTTCTCCAGATGCAAATTTGAATCAGAATCAGAAGCTTTTGTCAAGCATGGTTAAACAGGAATATGACTGGAAATCACCACCATATGAGGGTGTGCCTTTGCTGTTTGATTCAACAAATGGAAATTCGTTCATGACACCTTTGTGTGGAGCTTCTTCATACGGATCTAAACCTCAGGAGCAGTATTTACTCAGAGGAACTTTCCATGGATTTCAATTTGGACCTTATGATACTTTTATGCAAATGCAACCTCAGTGA 954 0.4256 MYATIAYSLLEEEEEMNRGIEVLSPASYLHNSNWLFQESAGTKWTPQENKQFENALALFDKETPDRWLKVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPGGTTDGSFTLEWVDNHEFDGFKQFYGVGCKRGSSTRPSEQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSPSSESNKPPSPDANLNQNQKLLSSMVKQEYDWKSPPYEGVPLLFDSTNGNSFMTPLCGASSYGSKPQEQYLLRGTFHGFQFGPYDTFMQMQPQ* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2224 317 MobiDBLite consensus disorder prediction 203 240 - -
Amo12g2224 317 SUPERFAMILY Homeodomain-like 145 199 IPR009057 -
Amo12g2224 317 ProSiteProfiles SANT domain profile. 39 94 IPR017884 -
Amo12g2224 317 ProSiteProfiles SANT domain profile. 152 200 IPR017884 -
Amo12g2224 317 CDD SANT 43 90 IPR001005 -
Amo12g2224 317 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Amo12g2224 317 Gene3D - 150 200 - -
Amo12g2224 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 244 IPR043363 -
Amo12g2224 317 CDD SANT 151 196 IPR001005 -
Amo12g2224 317 Pfam Myb-like DNA-binding domain 151 196 IPR001005 -
Amo12g2224 317 Pfam Myb-like DNA-binding domain 43 89 IPR001005 -
Amo12g2224 317 PANTHER TRANSCRIPTION FACTOR DIVARICATA 16 244 - -
Amo12g2224 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 199 IPR006447 GO:0003677
Amo12g2224 317 Gene3D - 36 103 - -
Amo12g2224 317 ProSiteProfiles Myb-like domain profile. 144 196 IPR001005 -
Amo12g2224 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 200 IPR017930 -
Amo12g2224 317 SMART sant 40 92 IPR001005 -
Amo12g2224 317 SMART sant 148 198 IPR001005 -
Amo12g2224 317 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2224 Amo-Chr12 101548679 101550525 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g2224 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2224 - - gmx:778077 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2224 12 101548679 101550525 Amo12g2224 12 101548679 101550525 ECH
Amo12g2224 12 101548679 101550525 Amo17g0977 17 25160470 25162476 ECH
Amo12g2224 12 101548679 101550525 Amo11g0214 11 3232991 3235377 ECH