Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2209 ATGGCTGGAGCTACCATGCTGCCTGCACTCGGCACTACCACCACCACTTCTTCTGCCGCCACACCACACTTTCTGAGCAAATTCTCCGCCGTCTACAAAGGAGTTCTCAGAGATGGTTTTCATGTGGCCATCAGAAGTATTAATGTGACATGTTGCATACCTGAGGAAGTTGAATTCTTGAAGGGATTGAGCCTGCTAACCTCACTGAGACATAAAAACATTGTAAAGATGAGAGGTTTTTGTTGCTCAAGTAGTAGAGGTGAATGTTACATTGTCTACGATTTTGTAATCGGTGGCACTCTATATATCTTGATATGGAAGATGGAAGTGAAAATGTGCTTGAGTCGTCTAAAAGGGTTTCCATCAGCAAGGGCAATGCAAAAGTTTCTAGCAGACGACATTGTTTACTCAGCACTGAAAGTTGGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACCACTAGACGCATCACCGAGAAGAGCGATGTTTCTGCATTCGGTGTCATTGTTCTTCAAGTCCTGTCTGGGAAGACAACAGTAGGGGGTTCAATCAGAATGGCAGTTGAGTTTTTCAGATTTGATGATTTTGTGGACACAAATATAAAGTGA 612 0.4346 MAGATMLPALGTTTTTSSAATPHFLSKFSAVYKGVLRDGFHVAIRSINVTCCIPEEVEFLKGLSLLTSLRHKNIVKMRGFCCSSSRGECYIVYDFVIGGTLYILIWKMEVKMCLSRLKGFPSARAMQKFLADDIVYSALKVGAAMGYLAPEYITTRRITEKSDVSAFGVIVLQVLSGKTTVGGSIRMAVEFFRFDDFVDTNIK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2209 203 SUPERFAMILY Protein kinase-like (PK-like) 28 183 IPR011009 -
Amo12g2209 203 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 123 202 - -
Amo12g2209 203 Gene3D Transferase(Phosphotransferase) domain 1 104 203 - -
Amo12g2209 203 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 102 - -
Amo12g2209 203 ProSiteProfiles Protein kinase domain profile. 17 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2209 203 Gene3D Phosphorylase Kinase; domain 1 13 95 - -
Amo12g2209 203 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 123 202 - -
Amo12g2209 203 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 26 102 - -
Amo12g2209 203 Pfam Protein tyrosine and serine/threonine kinase 27 149 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2209 Amo-Chr12 101230244 101232150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2209 26 115 Miscellaneous Gene Families AT4G22730 53.261 9.46e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Amo12g2209 PK_Tyr_Ser-Thr 3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2209 - - aip:107643018 221.861