LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g2200	ATGTCTGCTTCTGCCGAGTCCACAAGATGGATCTACGATGTATTCTTGAGCTTCAGGGGCAACGATGCTCGCAACCCATTCATCTTTCATCTCTACAACGCTCTCACCCAAGCCGCGATTCACGTCTTCAGGGACGACGAGGAGCTCCAGAGAGGAGACGAGATCTCCACCTCGCTGACTCGAGCCATCGAAGCTTCTAGAATCTCTCTTGTTGTCTTGTCACAAAACTTTGCGGCTTCCAAATGGTGCCTGCAAGAGTTGGAGAAAATAATGGAGTGCCATAGAACCATAGGCCAGAGGGCTATTCCGGTGTTCTATGATGTAGATCCAGCGGAGTTGCGCCATCAGAGAGGCACCATTGGAAGTGATTTGCAGTATCACATGGAAAGGTTCTCAGAGGAAAAAGTCAACGTCTGGAGGTCGGCGCTCCGGGACGTTGCTAACCTTTCAGGATTCGATTTGCAAAATTCCAGGAATCAAGCTGAGGATATCAATAGGATTGTAGAAAGTATCACTGCTTTGCTAGACAATACAATCTTGTTTGTTGCTCAACATCCTGTTGGAGTAGAGTCTCGTGTACAACATGTGATCAATCTGTTAAACTCCAACAGATCCGATAATGTTTTGATATTAGGAATATTGGGAATTGGGGGAATCGGAAAAACAACTATTGCCAAAGCCATTTACAATCAAGTTCATGGTTGTTTTGAGGGTTATTGCTTCCTTCCAAATATAAGAGAATTTTGGATGCAGAGTACTAGCCAAGTTCATTTGCAAGAACAGCTTCTTTCAAACATCTTCAAAGCTACAAAGATAAGGATACATAACATCGACTCTGGAAAAATTATATTACAACAAAGACTTTGTGGGAAAAAGTTGTTTCTTATCCTTGATGATGTTGATGAATTAGACCAACTAAATGCATTGTGTGGAAGTCGAGAATGGTTTGGTCCAGGTAGTAGAATAATCATCACAACAAGAAATGAACATCTTCTTAAAGTTCTTCAAGTTGATCACATTTCTAGGATGTCAAATATGGACCATCATGAATCTATTGAGCATTTTAGTTGGCATGCATTTAAGCAAAAATGTCCCAAGAGAGAATTTCTTGAACTTTCTAAGAAGGTAGTTGCATATTGTGGGGGATTGCCACTAGCTCATGAGGTTATTGGGTCTTTGTTGTTTGATAGGATGGAAAAAGTGTGGGAAAGTGTATTGGAGAAACTCACAAGAATTCCTAACCATGAAGTGCAAAAGAAGCTAAGAATAAGTTTTGATAGTTTAGTTGATGATACAATCAAAGAAATTTTCCTTGACATAGCATTTTTCTTTATTGGGATGAGTCGAAATGATGTGATACACATTTTAGATGAATACAATGCTGAAATTGGAATAGACATCCTTATAGATCGAAGTCTTGTGACTGTTGACAACAATAACAAGCTTGGAATGCATGATTTGCTGCGAGATATGGGAAGAGAAATTGTTCGCGAGAAATATCCAAAAGAGCCAGAAAACCGTAGCAGGTTATGGTTACAAAAGGAAGTGATTGAAGTGCTACAAACACATATTGGGACAAGAGCAACTGAGGGACTAGTCTTGAAGTTGACAAGAACCAATACAATTTGTTTGGAGGCTAAAGCATTTAAAGAGATGAAAAAACTCAGATTGCTTCAACTTGTTGGTGTACAACTTGGCAGAGATTTTGAATATATCTCAAGAGATTTGAGATGGCTTTATTGGCATGGATTTCCTTTGAAAAACATACCACCAAACTTTTCTCAGGAAAATGTAGTTTCCATTGAGTTAGAATCCAGTTGTCTCAAATTAGTGTGGAAGGAACCGCAGTTTCTGGAGAAGTTGAAAATTCTGAATCTCAGTCATTCCCAAAACCTGAGACAAACCCCAAACTTTTCATACTTGCCAAATCTTGAAAAGCTGCTACTCAAAGATTGTTCAAGCTTGTCTACAATTTCAGACACAATAGGACATCTGAAAAAGATTCTTGTAATAAATTTAGAAGACTGCATTAGCCTTGGCAACCTGCCAAGAAGCTTTTATAAGTTGAAATCTCTGACCACTCTCATCATTTCCGGATGCTCAATGATTGACAAATTGGAAGAGGACTTGGAACAAATGGAGTCATTAATAACTTTAATTGCAGATAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCAAAAAGCATTGGATATGTTTCTCTGTGTGGTTATGAAGGATTCTCACGTGATGTGTTTCCCTCTCTCATTTGGTCATGGATGTCACCAACAAATAATCTTTCATCTCTAGTTTCTGCCCCAGAACTTGTTTCCTTCTTAGATTTACCAAAGCTTCAATATCTTCAAGTAGAGTGCAACTCAGATCTTCAATTAGCTGAAGGTGTAACAAAAATTTTGGAAATATTGTATGCCACATACTACAATGAATTAGAAGCAATTCCAACAACATCACAAGTCTTGAATATTGAAACTTCAACAATAATTGATTTTCGCAGTGAATTTCAAATTAATGGATTAGTGAAGTCTCTTTTAATTGAAGTGGGAGCGAAGAGCCAAGTCAGTGGTATTCTTAAGGAAAGAATCTTACAGAAATTAAATACGAATGACCATGATCGTCAATCTGTGCTGCCCGGTGACAATTATCCTGATTGGTTGACCTTCAATAGCGAAGGTTCATCCATACACTTTAAAGTTCCTCACATTAACGGGCGTGACTTGAAGACAATGATGTTATGCGTTGTTTATTCTTCTTCCCAAGACACAATCTCATCAAAATGTCTTCAAAATGTGTTAATCATAAATTACACAAAGTATACCATTCAGGTCTATAAACGTGACACATTAGCCTCTCTTCAAAATGAGGACTGGCAATGCATAATTTCAACTTTGGAACCTGGAAACATTGTGGAGGTTCTTGTTCTTGTTTATGGCTTTGAATTTGTTGTGAAGAACACAACAATTTATCTCATATATAGTGAATCAACTAATGAGGAAATTGAGCATAGCAACAAAACAGGAGATAAGGATTCAACTTATGTGCCAGAAGTTAAGAATGTTGTTGCTTCGACTAGTGCTAAATCTAGATTGTGTGGAGCCTTGACTCTTGCTTCCTTTCTGATCTGGAAAAGTCGGCGATCTGGCAAACGAAGTTAA	3180	0.3821	MSASAESTRWIYDVFLSFRGNDARNPFIFHLYNALTQAAIHVFRDDEELQRGDEISTSLTRAIEASRISLVVLSQNFAASKWCLQELEKIMECHRTIGQRAIPVFYDVDPAELRHQRGTIGSDLQYHMERFSEEKVNVWRSALRDVANLSGFDLQNSRNQAEDINRIVESITALLDNTILFVAQHPVGVESRVQHVINLLNSNRSDNVLILGILGIGGIGKTTIAKAIYNQVHGCFEGYCFLPNIREFWMQSTSQVHLQEQLLSNIFKATKIRIHNIDSGKIILQQRLCGKKLFLILDDVDELDQLNALCGSREWFGPGSRIIITTRNEHLLKVLQVDHISRMSNMDHHESIEHFSWHAFKQKCPKREFLELSKKVVAYCGGLPLAHEVIGSLLFDRMEKVWESVLEKLTRIPNHEVQKKLRISFDSLVDDTIKEIFLDIAFFFIGMSRNDVIHILDEYNAEIGIDILIDRSLVTVDNNNKLGMHDLLRDMGREIVREKYPKEPENRSRLWLQKEVIEVLQTHIGTRATEGLVLKLTRTNTICLEAKAFKEMKKLRLLQLVGVQLGRDFEYISRDLRWLYWHGFPLKNIPPNFSQENVVSIELESSCLKLVWKEPQFLEKLKILNLSHSQNLRQTPNFSYLPNLEKLLLKDCSSLSTISDTIGHLKKILVINLEDCISLGNLPRSFYKLKSLTTLIISGCSMIDKLEEDLEQMESLITLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWSWMSPTNNLSSLVSAPELVSFLDLPKLQYLQVECNSDLQLAEGVTKILEILYATYYNELEAIPTTSQVLNIETSTIIDFRSEFQINGLVKSLLIEVGAKSQVSGILKERILQKLNTNDHDRQSVLPGDNYPDWLTFNSEGSSIHFKVPHINGRDLKTMMLCVVYSSSQDTISSKCLQNVLIINYTKYTIQVYKRDTLASLQNEDWQCIISTLEPGNIVEVLVLVYGFEFVVKNTTIYLIYSESTNEEIEHSNKTGDKDSTYVPEVKNVVASTSAKSRLCGALTLASFLIWKSRRSGKRS*	1060

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g2200	1059	SMART	till_3	11	149	IPR000157	GO:0007165
	Amo12g2200	1059	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	174	440	IPR027417	-
	Amo12g2200	1059	Gene3D	-	345	429	IPR042197	-
	Amo12g2200	1059	Gene3D	-	1	147	IPR035897	-
	Amo12g2200	1059	PRINTS	Disease resistance protein signature	380	394	-	-
	Amo12g2200	1059	PRINTS	Disease resistance protein signature	616	632	-	-
	Amo12g2200	1059	PRINTS	Disease resistance protein signature	210	225	-	-
	Amo12g2200	1059	PRINTS	Disease resistance protein signature	287	301	-	-
	Amo12g2200	1059	ProSiteProfiles	TIR domain profile.	10	175	IPR000157	GO:0007165
	Amo12g2200	1059	SUPERFAMILY	"Winged helix" DNA-binding domain	416	521	IPR036390	-
	Amo12g2200	1059	SUPERFAMILY	L domain-like	503	838	-	-
	Amo12g2200	1059	Gene3D	-	156	340	IPR027417	-
	Amo12g2200	1059	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	997	IPR044974	GO:0006952
	Amo12g2200	1059	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	152	IPR035897	-
	Amo12g2200	1059	Coils	Coil	703	723	-	-
	Amo12g2200	1059	Pfam	NB-ARC domain	190	423	IPR002182	GO:0043531
	Amo12g2200	1059	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	22	997	-	-
	Amo12g2200	1059	Gene3D	Ribonuclease Inhibitor	498	854	IPR032675	-
	Amo12g2200	1059	Pfam	TIR domain	12	171	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g2200	Amo-Chr12	101107151	101122203	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g2200	12	733	WRKY Transcription Factor Family	AT4G12020	29.032	4.91e-73	264

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g2200	-		-	ahf:112727938	1520.37