Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2194 ATGTCGTCAACGGCGTCATCTTCTTCACAAAAGAAAGAACCCGGACTCATGAAATTCACTACTTCCTCCTATCGAAACTGGACCTATGACGTGTACGTGAGCTTCGACCGTACCACCAACAAATTCGTCTCGGATCTCTATGCAAGGCTCAGCGCTGCAGGGGTTCGCGTCTTCAAGGACGAAATGGAGCCCCGAAGCGGAGACCAGATCCTGTTCAATGCAATCGAAGATTCTAGAATCTCGATCGTGGTTTTCTCCAGAAGCTATGGGGATTCGAAGTGGTGGTTGAAGGAATTGGAGAAGATAATGGAGTGTCGGAGCAGCAAGGGTCAGAAGGTTGTGCCTGTGTTCTACGGTGTTGATCCGTCGGAAGCTGGGGCGGCGTTCGCATACGGGGAACCGCTCAGGGAAGCTGCTTGCCTTCCGGGTTTTGTTACATATATCAGCAGGGAGAGAGATGAAGCCTTAGACAATATTGTTGAACATATCACTGCCTTTTTAGATGGTAAGGATCACTGGTTCACTCTGCCGAATGTAGAGAAATTGCAACCTCGGGTGCAGGATTTAATTCAAGTTCAACTGTTGAATTATGATAAAGTTTTAATACTTGGGATATGGGGAATGGCAGGCATTGGTAAAACAACCATTGCCATGGCTCTTTATAATCAAATCTGTTACAGATTCCAGAGGAGGATGTTTGTTGACAATATCAGCGAGAGATGTGAGCAGCATAGTATAGTTTCTTTACAGGAAGAGCTTTTTTCTTGTATCTGCAAAACAACAGAAGAAACAAAAGAAGAAGCAACGAAAGAAGCAAAGGAAAAAGCAACAAAAGAAACAACAGAGGAAACAACAAAAGCAGCAGTGGAAGAAGCAACAGAAGAAGCAACGGAAGAAGAAAGGGAAGAAACTACTGCAGAAAAAGCAAAGATTCATGACATTGAATCAGGAAAGCTTTTATTAAAGAAAAATCTCAGCAATAAAAAAACGCTTCTTGTTCTAGACGATGTGACTGAACGAGACCATTTAGAGGCATTGTGCGGAAGTCGCGAGTGGTTTGGTCCTGGAAGCACAATAATCATCACCACTAGGGATAGGAGTATGCTCAAGGACGCTGATGATATATATACAGTGAAAGGAATGGATTATGATGAATCTATTGAGCTATTTTGTTGGCACGCATTCAAGAATAAGGAAATTCCTGCAGAAGAGTATCGTGAACTTGCAGAATCTATAGTTGAGTACTGTGGGGGAGTACCACTTTTTCTTGAAGTAGCTGGATCCCATTTATATGGAAAGATGATAGAGGAGTGGGAGCCTGCATTGGAAGAACTTGAGGAAAATCCTCCTTATAAATTGCAGAGGTTTCGACAAGTGAGCTTTGATAGTTTAAGAGATGACTCGCTGAAGAAGATATTTCTTGATATAGTTTGTTTCTTTGTTGGTATGAACCGGAACCATGTTGTGAAAATATTGAATGGCACTGGACGTAATGGAGAAAAGGCCTTAAGTGCCCTTGAAGATAAATGTTTAGTAACTGTTGATGGCAACCAGCTTCAAATGCATACCTTGATAGAAGAAATTGGAAGAGAAATTGTTGATGAGGAATCACGTCTTACTCCCAAGCTAAGTACTTATGATGTATTCTTGAGTTTCCGAGGAAAAGATACTCGTGCAAAATTCACCTCACATCTCCATGCGGCTCTCGAAAATGCTGGATTTTATGTTTTCAAGGATGATGTTCAACTTCCAAGGGGAGAATGGATATCAATCTCACTACTGGAAGCAGTGAAAGACTCCAGAATGTCTATTATTGTGCTGTCTACAAATTATGCTGGTTCAAAATGGTGTCTGGAAGAGTTAGAGAATATAATGCAGCTTCAAAGAACCACAGCTCACGCAGTCGTGCCAATATTCTACGGTGTAGATCCCTCGGAAGTACGTCACCAAAGTGGTGTATTTGGACAAAAATTTAATGATCTTTTAAGAAGTCACCCAGTGGAGGAAGACAAGGAGAAAAGTTGGAGGACATCACTCCGTCAAGTTGGTAGCCTTTCAGGAATTGTTGTGGTAAATTCCAGGAATGAGAATGAGGATATCAAGAAGGTTGTTGAAGATGTTACTCATTTGCTTGACAAGACAGAATTGTTTGTTGCAGACTATCCGGTGGGAGTAACATCTCGTGTGCAAAATGTGATCAATCTATTGATGGAACAACAATCAAAAGATGTTTTACTTCTTGGGATATGTGGCATGGGAGGACTTGGTAAAACAACCATTGCCAAAGCACTTTATAATCAACTTAGTCGCAAATTTGATTGTAAGTGCTTCCTACTAAACATCAGGGAAGTTTGGGAGCAAGATAATGGTCAAGTTTCTTTACAAGATCGTCTCCTTTCTGATATTTACAAAACAACAAAGATACCGATACGTAGCACTGAATCAGGAAAACTTGAATTGAAGAATCGACTTTGCCACAAAAGGGTACTTCTTGTTCTTGATGATATAGATAAAGTGGAGCAAATGAATGCATTGTGTGGAAGTCATGAATGGTTTGGTTCCGGAAGCTGTATAATCATCACAACAAGAGATGAGCATCTGGTTAAAATGCGTGGCGTTGAACCTATAATTTATAGATTGGATGAAATGGATGATAGTGAAGCTGTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCATATCCAGACACAAATTTTTCTGTCCTTACTAAAGATGTAGTTGCATATTCTTCTGGACTGCCACTTGCTCTTGAAGTTCTTGGGTCCTATTTGTGTGATAGGGAAATCGAAGTGTGGAAGAATGCTTTGGAGAAACTTAAAAGGATTCCCAATCATAAAATACAGGAGAAGCTAAGAATAAGTTTTGATAGTCTTAGTGATGATACTGAGAAAGAGATATTTCTTGATATAGCATGCTTTTTCATTGGGATGGACCGAAGTGATGTTATTCAGATATTAAATGATTGCGGACTTTTCGCTGAAATTGGAATCAGTGTCCTTAGAGAGCGAAGCCTTGTAACTGTTGACAGCACAAACAAGCTTGGAATGCATAATTTGCTAAGGGACATGGGAAGAGAAATAATTCGCAAGGAATCACCAGATGAACCTGAGAAGCGTAGTAGATTATGGCTTCATGAGGAAGTCCTTCATGTATTAACAGAATACAAGGGAACTACAACTATCACAGGACTGGCTTTGAAGTCACCAAGGACGAATCCAATTTCATTAAGCACAAAGGCATTTGAAGAGATGAATAAACTCAGATTGCTTCAGCTCGAAAAAGTACAACTTGATGGAGATTTCAAATATATTTCTAGAGATCTTAGATGGATGAGTTGGCATGGATTTCCTTTGAGTCACATTCCTAAAAGCTGCTGTCAGAAAGGTTTAGTTGCCATTGAGTTGGAATATGGCAATCTCAAAATAGCATGGAAGCAGGCTCAGTTGTTGAATAAGCTGAAAATTCTGAATCTCAGTCATTCTCATCAATTGAGAGAAACTCCAGACTTTTCATACTTACCTAACCTTGAAAAGCTAATACTCGAAGATTGTTCGAGTTTGTCTTCGGTTTCCCATACCATTGGACATCTCAATCAACTTCTTCTGATAAATCTGAAAGATTGTAAAAGCCTTCGTAGCCTTCCGCGAAGCATCTATAAGTTAAAGTCACTCAAAACTCTCATTCTTTCTGGATGCTTAATGATTGACAAGTTGGAAGAGGACATGGAACAGATGGAATCTTTGACAACCTTGAAGGCAGAAGACACTGCTATAACACAAGTTCCGAATGCACTAGTAAGAATGAAAAATATTGGTTACATATCTTTGTGTGGCTTTGAAGGATTGGTTCGGGATGTTCTTCCATCTATCATTTGGTCATGGACCTATCCAACAAATAATGTGTCATCTCTGTTTCAAAATACTCTCTATCATCTATTATCTATGATCAGCAAACTTCCAAAGCGTAGTAGTCTTTTGTTGGAATCCGGTCTGCAACTTGAGATACCTGAAGATGTGGTCTTGAAAACCTTAGATGCTACAAATTGCAAGATAACTAATCTTGATGAAAATGCTTCCGTCCATGATATCACAGAAGATGAGAATGTGACTGTTTTTGATTCTGATGATATGGAGACCGATATGAATGAAAATGTTTCTGATTTTGAAGATATGGCAGTTGACAGAAATGCTGTTGTTTCTGACATGCTAACAGATAAAAGCATTGATATCATTTCCAATGGAGGCGAAAGTAGAATTAGCAGATTCTCCAGACTTCGTTCTCTTGTTCATGTTGTTCTAAAGGCACGACTATTTTGGTTTGGTTTTATTGCTATCCTAATTTGGATCACATGCAGTTATTCTGAAAATCAAGAATGTTCAACCTCATTTCAAGTATGTCAGCACACACCCACTTTTAAGGAAGCAGAGGTAATTCCCAATAAGCAAGTAGTGAAGTTGTTAGAGGAGGAAAGTAAAAGAAAGAGTAAACTCTCATATAATCGAAGAGTTGTGGAGCCTCCGCCGGAAAGTAAAAACATCGAAGCATCGGCAACCATCAAGAAGTCCCGGCCAAAGTCTAAAGGAGATATGCCTTTAGTTAAGACATATCCACCTGCAATTGCTTCATTGTCTAACTCTCAAGAGATGTCAGACAATTCAGAGTATGCTAGCAATACTCAAAATCAAGATGAACTGCTTCAGACTCTTTTTGCTTCAAATCCTAAAGATGATGAACTTGCATTGATTGTTGATCCTATATCACTAATCACCACTCAAGAAGACAATGATTTGCTTGCAGAACTAGAACAAATCTTGTCAGAGAGCTATGTCTTGTCCACGAATAAGGTCGCTTCTGCTACTTCTGTTTCAGAACTTCAAAGTCTTCCATTGATTGCAGTCATTCAAAAAGTACAACTACTTTTGGATAATGAAGTAGAAGCTTTGGTAGCAGATAATGACATTAGAAAACAGCTTCTTGACTACTTAGCTCATCTGGTTCAAATGAAGTCACAAGTCCCTACAAATATTCAGAAGTTGGTCAAGGAGATTAAGGAATTTTATGAAGGTTTTCTTGGTAACTTTCCACCTATTCAAGAAGTCTTGGACAATCATCAAAGGTTAATTGACACTAAGAATAGACTTGAGGGGGAGCTGGAAATAGCCAAGGCAAAGCAGGCTCATTTTTCTACTTCAATTTCTAAAGGGAAAGTGAGGATGAATGAGATGTCAAAAGAGATCAATGAGTTGGAGGTGAAACTGAAAGCCTTATATGACAAGAGAGACAAATTAAAATCCGCTGTGAAACTTTGTGAGGTTGAAACTATAAACATCAATAGGAAAGCTGTCACTTGGGTGAAAGAAACTGAAGAGGTTGTGAGTACTCTTAAGGCTTCAGAGTCTGCCTTCAAAAATGCTGAATCTTCAAAACATAATTATGAGAGGAAGCTAAGTGAATTGAAGCGAGCTCTTGGCAAAATTAAACATTAG 5508 0.3927 MSSTASSSSQKKEPGLMKFTTSSYRNWTYDVYVSFDRTTNKFVSDLYARLSAAGVRVFKDEMEPRSGDQILFNAIEDSRISIVVFSRSYGDSKWWLKELEKIMECRSSKGQKVVPVFYGVDPSEAGAAFAYGEPLREAACLPGFVTYISRERDEALDNIVEHITAFLDGKDHWFTLPNVEKLQPRVQDLIQVQLLNYDKVLILGIWGMAGIGKTTIAMALYNQICYRFQRRMFVDNISERCEQHSIVSLQEELFSCICKTTEETKEEATKEAKEKATKETTEETTKAAVEEATEEATEEEREETTAEKAKIHDIESGKLLLKKNLSNKKTLLVLDDVTERDHLEALCGSREWFGPGSTIIITTRDRSMLKDADDIYTVKGMDYDESIELFCWHAFKNKEIPAEEYRELAESIVEYCGGVPLFLEVAGSHLYGKMIEEWEPALEELEENPPYKLQRFRQVSFDSLRDDSLKKIFLDIVCFFVGMNRNHVVKILNGTGRNGEKALSALEDKCLVTVDGNQLQMHTLIEEIGREIVDEESRLTPKLSTYDVFLSFRGKDTRAKFTSHLHAALENAGFYVFKDDVQLPRGEWISISLLEAVKDSRMSIIVLSTNYAGSKWCLEELENIMQLQRTTAHAVVPIFYGVDPSEVRHQSGVFGQKFNDLLRSHPVEEDKEKSWRTSLRQVGSLSGIVVVNSRNENEDIKKVVEDVTHLLDKTELFVADYPVGVTSRVQNVINLLMEQQSKDVLLLGICGMGGLGKTTIAKALYNQLSRKFDCKCFLLNIREVWEQDNGQVSLQDRLLSDIYKTTKIPIRSTESGKLELKNRLCHKRVLLVLDDIDKVEQMNALCGSHEWFGSGSCIIITTRDEHLVKMRGVEPIIYRLDEMDDSEAVELFSWHAFKQAYPDTNFSVLTKDVVAYSSGLPLALEVLGSYLCDREIEVWKNALEKLKRIPNHKIQEKLRISFDSLSDDTEKEIFLDIACFFIGMDRSDVIQILNDCGLFAEIGISVLRERSLVTVDSTNKLGMHNLLRDMGREIIRKESPDEPEKRSRLWLHEEVLHVLTEYKGTTTITGLALKSPRTNPISLSTKAFEEMNKLRLLQLEKVQLDGDFKYISRDLRWMSWHGFPLSHIPKSCCQKGLVAIELEYGNLKIAWKQAQLLNKLKILNLSHSHQLRETPDFSYLPNLEKLILEDCSSLSSVSHTIGHLNQLLLINLKDCKSLRSLPRSIYKLKSLKTLILSGCLMIDKLEEDMEQMESLTTLKAEDTAITQVPNALVRMKNIGYISLCGFEGLVRDVLPSIIWSWTYPTNNVSSLFQNTLYHLLSMISKLPKRSSLLLESGLQLEIPEDVVLKTLDATNCKITNLDENASVHDITEDENVTVFDSDDMETDMNENVSDFEDMAVDRNAVVSDMLTDKSIDIISNGGESRISRFSRLRSLVHVVLKARLFWFGFIAILIWITCSYSENQECSTSFQVCQHTPTFKEAEVIPNKQVVKLLEEESKRKSKLSYNRRVVEPPPESKNIEASATIKKSRPKSKGDMPLVKTYPPAIASLSNSQEMSDNSEYASNTQNQDELLQTLFASNPKDDELALIVDPISLITTQEDNDLLAELEQILSESYVLSTNKVASATSVSELQSLPLIAVIQKVQLLLDNEVEALVADNDIRKQLLDYLAHLVQMKSQVPTNIQKLVKEIKEFYEGFLGNFPPIQEVLDNHQRLIDTKNRLEGELEIAKAKQAHFSTSISKGKVRMNEMSKEINELEVKLKALYDKRDKLKSAVKLCEVETININRKAVTWVKETEEVVSTLKASESAFKNAESSKHNYERKLSELKRALGKIKH* 1836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2194 1835 Coils Coil 258 278 - -
Amo12g2194 1835 Gene3D - 542 716 IPR035897 -
Amo12g2194 1835 SUPERFAMILY Toll/Interleukin receptor TIR domain 545 687 IPR035897 -
Amo12g2194 1835 MobiDBLite consensus disorder prediction 269 292 - -
Amo12g2194 1835 PRINTS Disease resistance protein signature 746 761 - -
Amo12g2194 1835 PRINTS Disease resistance protein signature 1155 1171 - -
Amo12g2194 1835 PRINTS Disease resistance protein signature 823 837 - -
Amo12g2194 1835 PRINTS Disease resistance protein signature 917 931 - -
Amo12g2194 1835 ProSiteProfiles TIR domain profile. 544 711 IPR000157 GO:0007165
Amo12g2194 1835 Coils Coil 1704 1731 - -
Amo12g2194 1835 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 124 IPR035897 -
Amo12g2194 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 977 IPR027417 -
Amo12g2194 1835 ProSiteProfiles TIR domain profile. 27 152 IPR000157 GO:0007165
Amo12g2194 1835 SMART till_3 28 159 IPR000157 GO:0007165
Amo12g2194 1835 SMART till_3 545 685 IPR000157 GO:0007165
Amo12g2194 1835 Gene3D - 21 169 IPR035897 -
Amo12g2194 1835 Coils Coil 1802 1829 - -
Amo12g2194 1835 Coils Coil 282 309 - -
Amo12g2194 1835 MobiDBLite consensus disorder prediction 269 309 - -
Amo12g2194 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 476 IPR027417 -
Amo12g2194 1835 Gene3D - 882 966 IPR042197 -
Amo12g2194 1835 SMART AAA_5 743 882 IPR003593 -
Amo12g2194 1835 SMART AAA_5 199 388 IPR003593 -
Amo12g2194 1835 MobiDBLite consensus disorder prediction 1504 1540 - -
Amo12g2194 1835 CDD AAA 723 882 - -
Amo12g2194 1835 Pfam TIR domain 546 708 IPR000157 GO:0007165
Amo12g2194 1835 Pfam TIR domain 29 125 IPR000157 GO:0007165
Amo12g2194 1835 Gene3D - 717 874 IPR027417 -
Amo12g2194 1835 SUPERFAMILY "Winged helix" DNA-binding domain 452 539 IPR036390 -
Amo12g2194 1835 SUPERFAMILY "Winged helix" DNA-binding domain 953 1059 IPR036390 -
Amo12g2194 1835 SUPERFAMILY L domain-like 1039 1361 - -
Amo12g2194 1835 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 34 539 - -
Amo12g2194 1835 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 554 1411 - -
Amo12g2194 1835 Pfam NB-ARC domain 192 449 IPR002182 GO:0043531
Amo12g2194 1835 Pfam NB-ARC domain 727 952 IPR002182 GO:0043531
Amo12g2194 1835 Gene3D - 380 471 IPR042197 -
Amo12g2194 1835 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 539 IPR044974 GO:0006952
Amo12g2194 1835 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 554 1411 IPR044974 GO:0006952
Amo12g2194 1835 Gene3D Ribonuclease Inhibitor 1069 1397 IPR032675 -
Amo12g2194 1835 Gene3D - 175 377 IPR027417 -
Amo12g2194 1835 Coils Coil 1739 1773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2194 Amo-Chr12 100972915 100990978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2194 29 541 WRKY Transcription Factor Family AT4G12020 25.376 2.44e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2194 - - adu:107475200 3412.85