Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2188 ATGTCTTCCCAAAACCAGGACCCCGAATTCACATTCAATCCCCACACAACAATCATGTATGACGTGTACATAAGTTTCGAACCCCACTACCCTTCCCACCCTTTCATTTCACTTCTCTCTGGCGCTCTCAAACGTGCTGGAGTGCATCTTTTTCTGGACAACTACATGAAGCCAAAAAGTAAAGACCTTATACTATCTAGCGTAATCAAAGGATCCAGAGTTTCTATCGTAGTTTTCACTACCGATTTTGCTTGTACAACCTGGAGTTTGAAAGAGCTTGAGAAAATCATGGAGTATCGCAGCAGCAGAGGTCAGCAAGTTGTGCCTGTGTTCTATGAGGTAGATCCCGAGGAAGTGTTTAATCAGACTGGCCATTTCGGAGAAGCTTTGTTGGCTACTCTTGCAAGAACTTCAACCAATCAAGCCAAGGTGTTGAGTTATAGGACCGCGCTAAAAGAAGCTGCTGCCATTTCACCAAGGTTTCTCACCAATTTTCGGGATAGAAGCAAAACCATAGATAGTATCGTTGGACATGTTACCTCTTTGCTAGATTCAACTGCCTTATTCGTTGCAGAACATCCAGTAGGAGTAAACTCTCACGTGCAAGATTTGATTCAACTGTTAGATAATAAGAAATCAGATGGTGTTTTCATTATGGCAATATGGGGAATGGGAGGAATAGGTAAAACAACAGTTGCCAAAGCCCTCTACAATCAAATTAGTCACAATTTTGATGTGAGGAAATTTGTCCCGGACATAGATGAAAGGATGGAGGATTTCCCAAGAAGGTGGCCTTTGGGCATTATAGAAGAGGAGCTTCTTTTGTTTCTCAAAGAACAAGTTGCAACAAAAGCTTGCAATTTCGACTCAACAAGTGTTATATGGTGGGAAGGAATTCGTTGTGTAAAGGTATTGCTTGTACTTGACAATGTGAGAAGTGAAAAAGAGCTAGAGGTTTTGCCTGTAACTTGTGAATGCTTTGGTCCTGGGAGTATAATAATCATCACCACAAGGACTAAACATGATCAGTTTAATGAGATTGGAATTAATCATGTTTACAGACTGAAAGAAATGGATTACAACGAATGTGTTGAGCTTTTTAGTCAGAGTGCTTTCAAGAAAGCAACTCCTGAAAGGACTTATGCTGATCTGATCAATCGTGCACTTGAATATTCTGATGGATTGCCACTAGCTCTTGTGGCAGTTGGATCTGTATTATTTGAAAGAAGTAGAGTAGAGTGGGACAGTGTATTGGAAAGGCTTAAAAGATTTCCCCTTCAAGATGTATGGCAAGTTTTAAGAAAAAGCATTGATTCTTTGGGATATGACATGAAGCAAATGTTTCTTGTGCTAGCTTATTTGAGTCATTTCTTTATTGGAATGGACCAAAATGATGTAACTCAAATATTACAAAAAGCTGGATGTGATGTGGTAGTGGCACTAAAAGCAATCAAAGGGCTTGAAGATCATAGTCTTCTGCCTTATGATGTATTCTTGAGCTTTCGAGGCAAAGACACTCGTTCCAATTTCATGTCACATCTTCATGCATCTCTTGAAAATGCTAGTATCTATGTTTTCAAGGATGATGATGAGGAAGCAAGAGGGGAAAATATCTCACTTTCCCTTCTAAAAGCAATTGGAGAGTCTAGAATTTCTATCATCATTTTGTCACCAAATTATGCAGATTCAAAATGGTGCTTGCAGGAGTTGGAAGACATAATGAGATGTTATAATAATCAAACTCAAAAGGTGTTGCCAGTGTTCCACCATGTTGATCCATCAGAAGTGCGAAATCAAGCTGGTAGATTTGGAGAGGCTTTTGAAGAATTTATAAAGAAAAACCCCCAAAATAAAGTCAAAGAGCAGGATTGGAGGAAAGCACTCCGTGATGTAGGCTCCACTGCTGGATTTGTTGTTCAAAATTGGAGGAATGAAAGTGAGGATATTAAGAAGATTGTTGAACATGTTACTCATATGCTAGACATGAATGAATTGTTCATTGCTAATCATCCAGTAGGAGTAGAATCTCGTGTAAAAGAGCTGATTGAACTACTAAAAAGCCATCAATCAGAAGATCCTCTACTATTAGGCATATGGGGCATGGGAGGGATCGGTAAAACAACCATTGCCAAAGCAGTTTATAATAAAATTTGCCGTCAGTTTGATGGTCGATGTTTCCTCTTAAATATCAGGGAAGTTTGGGATCAAGATAATGGTGGCCTTCATTTGCAGCAGCAACTTCTTTCTTCTGTCTATAAGACAACAAAAATAAAGATACAGAACATAGAATCTGGAAAATCAATATTAGAGAAAAGGCTTGGACAGAAAAGGATACTTGTTGTACTTGATGATGTGGATAAATTAGAGCAACTTAATGCTTTGGCTGCAAGCTATAAATGGTTCTGTCCAAGGAGTATAATAATCATCACAACAAGAGATGAAAGACTTCTTAGTTGGCTTGAAATTGACAAAAGATATAAAATGGAAGGGTTGAATGAGGAAGAATCTATTGAACTTTTCAGTTGGCATGCATTCAAAGAACCACGTCCTAGGAAAAAATTTGCTACACTTTGTGGTGAAGTTATTTCCTATTGTGGGAATTTGCCATTAGCTCTTGAGGTCATTGGGTCACATTTGTTTGAAAGAGGAATAAAAGAGTGGAAGAGTGTCTTGAACAAACTCAAAAGCATTCCCAATAAAGAAGTGCAAAAGAAGCTTAAGATAAGCTTTGATGGTTTAAGTGATGACAAAGATAGAGAAATATTCCTTGATATAGCTTTTTTCTTTATTGGAATGGACAAAAGTGATGTCACTGATATACTAAATGGTTGTGGACATTCTGCTGGGATTGGAATAAGTATTCTTTTGGAGCGATGTCTTGTAACTGTTGACACTAAGAATAAACTTCGAATGCATGGTTTGCTAAGAGACATGGGAAGAGAAATCATTCGCGAGAGTTCTCCAACAAAACCTGAAGAACGTAGTAGGTTATGGCATTCAGAGGATGTGCTTGATGTATTATCAAAAGAATTGGGAACAAAAGCTACCGAGGGAATTGCTTTGAAGTTATCAAGGATGAATCCAATTTGTTTGAAGACTAAAGCATTTAAGTACATGAGAAGACTCAGATTACTTCAACTTGCTGGTGTGCAACTTAAAGGAAACTTCAAACACCTTTCGACAGACCTTCGATGGCTATGCTGGCATGGATGCCCTTCAAGATATACAGAAGTAAACTTTGATCAAAGAAATTTAGTTGCCATTGACTTAAAATATAGCTACCTCCAACATGTATGGAAGAAGGGCCAGATGATGAAGAAACTGAAAATTCTCAATCTTAGTCATTCTGAACACTTGACACATACTCCAGACTTTTCATACTTGCCCAATCTTAAAAAGTTAATACTCAAAGATTGTCCAAGATTGTGTGCAATCTCCCACACCATTGGACATCTCAAACGAATTCTTCTAATCAACTTGAAAGATTGTACAAGCCTTCGAGTGCTTCCGAAAAGCATCTACAAATTAAAATCTCTCAAAACTCTCATTCTGTCTGGATGTACAAAGATTGACAAATTGGAAGATGACTTAGAACAAATGAAATCTTTGACAACATTGATGGCAGATAACACTGCTATAACCAAAGTTCCCTATGCACTACCAAGATTAAACAACATTGTTTACATTTCTTTGTGTGGGTTTGAAGGATTGTGTCGTAATGTGTTTCCTTCAATCATCTGGTCATGGACCTCTCCAACAAATAATCTCTCACCCCAAATGCATACAAATTTGGACCTGTCAAATCTTGTTTCCATAATGGTATCCAATAGCAGTAGTTCCCATGCAGGCCTATCATCCATCATTAAAGAGCTTCCAAAGGTTCAGAATCTTCAATTGGAATGTGGCTCACAACTAAACATATCAGGAAATGTAAATTTAGTTTCTTCTAATGACACAAATTTTAAGGAACTGGAAGCACCATCAAGAACATCACATGTCTCAAATATGAATACCTCAGCATTAGGTGGTTGTTGCAGTGAAGGTTACATTTCTAGATCAGAAAACTCCTTGAATATCATTTTAATCCAAATGGGAATGAATTGCTTAATCACAAAAGCACTCCGTCAGAGCATTTCACAGAAGCTTACTAGCAATTTAGCTGGAGATTTTTTGCTTCCTGGAAACAACAATCCTGATTGGTTAACCTTCAGCAGTGAAGGTTCTTCTGTGAGTTTTGAAGTTCCAAAAGTTAATGGCCGCAGCTTGAAGGCGGTGATATTGTGCATTGTTTACTCTTCTTCCTCAAACATCATAGCATCTGAAGGAATAAGTCTAAAGAATATGATGATCATAAATTACACAAAAGCCACCACTCATGTCTACGAGGGAGATACCTTGTCTTCACTTAAAGGTGAAGACTGGCAGAGTGTCTTATCAAATCTTGAAGCCAGTGACAAAGTGCAGGTTGTTGCTGTTGTTTTGGGGTATGGATTCAGAGTGAAGGAAACAACAGTTTATCTCATATATGATGATCCAATTGACCAAACCATGAAGCAACAGGATGATGGTAATGATATGGTAGCAGATGAGAATGTAACTGTCCATGGTGGAGATGAAAAAGAAGAATTTAAACTCCTTAGAAAGAGAAAATTCCAATATTATGATGATACATCTAGTGAAGATGACAGAGTGGGAGATGTTTAG 4704 0.3797 MSSQNQDPEFTFNPHTTIMYDVYISFEPHYPSHPFISLLSGALKRAGVHLFLDNYMKPKSKDLILSSVIKGSRVSIVVFTTDFACTTWSLKELEKIMEYRSSRGQQVVPVFYEVDPEEVFNQTGHFGEALLATLARTSTNQAKVLSYRTALKEAAAISPRFLTNFRDRSKTIDSIVGHVTSLLDSTALFVAEHPVGVNSHVQDLIQLLDNKKSDGVFIMAIWGMGGIGKTTVAKALYNQISHNFDVRKFVPDIDERMEDFPRRWPLGIIEEELLLFLKEQVATKACNFDSTSVIWWEGIRCVKVLLVLDNVRSEKELEVLPVTCECFGPGSIIIITTRTKHDQFNEIGINHVYRLKEMDYNECVELFSQSAFKKATPERTYADLINRALEYSDGLPLALVAVGSVLFERSRVEWDSVLERLKRFPLQDVWQVLRKSIDSLGYDMKQMFLVLAYLSHFFIGMDQNDVTQILQKAGCDVVVALKAIKGLEDHSLLPYDVFLSFRGKDTRSNFMSHLHASLENASIYVFKDDDEEARGENISLSLLKAIGESRISIIILSPNYADSKWCLQELEDIMRCYNNQTQKVLPVFHHVDPSEVRNQAGRFGEAFEEFIKKNPQNKVKEQDWRKALRDVGSTAGFVVQNWRNESEDIKKIVEHVTHMLDMNELFIANHPVGVESRVKELIELLKSHQSEDPLLLGIWGMGGIGKTTIAKAVYNKICRQFDGRCFLLNIREVWDQDNGGLHLQQQLLSSVYKTTKIKIQNIESGKSILEKRLGQKRILVVLDDVDKLEQLNALAASYKWFCPRSIIIITTRDERLLSWLEIDKRYKMEGLNEEESIELFSWHAFKEPRPRKKFATLCGEVISYCGNLPLALEVIGSHLFERGIKEWKSVLNKLKSIPNKEVQKKLKISFDGLSDDKDREIFLDIAFFFIGMDKSDVTDILNGCGHSAGIGISILLERCLVTVDTKNKLRMHGLLRDMGREIIRESSPTKPEERSRLWHSEDVLDVLSKELGTKATEGIALKLSRMNPICLKTKAFKYMRRLRLLQLAGVQLKGNFKHLSTDLRWLCWHGCPSRYTEVNFDQRNLVAIDLKYSYLQHVWKKGQMMKKLKILNLSHSEHLTHTPDFSYLPNLKKLILKDCPRLCAISHTIGHLKRILLINLKDCTSLRVLPKSIYKLKSLKTLILSGCTKIDKLEDDLEQMKSLTTLMADNTAITKVPYALPRLNNIVYISLCGFEGLCRNVFPSIIWSWTSPTNNLSPQMHTNLDLSNLVSIMVSNSSSSHAGLSSIIKELPKVQNLQLECGSQLNISGNVNLVSSNDTNFKELEAPSRTSHVSNMNTSALGGCCSEGYISRSENSLNIILIQMGMNCLITKALRQSISQKLTSNLAGDFLLPGNNNPDWLTFSSEGSSVSFEVPKVNGRSLKAVILCIVYSSSSNIIASEGISLKNMMIINYTKATTHVYEGDTLSSLKGEDWQSVLSNLEASDKVQVVAVVLGYGFRVKETTVYLIYDDPIDQTMKQQDDGNDMVADENVTVHGGDEKEEFKLLRKRKFQYYDDTSSEDDRVGDV* 1568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2188 1567 CDD AAA 672 825 - -
Amo12g2188 1567 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 159 IPR035897 -
Amo12g2188 1567 ProSiteProfiles TIR domain profile. 18 155 IPR000157 GO:0007165
Amo12g2188 1567 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 495 IPR044974 GO:0006952
Amo12g2188 1567 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 505 1504 IPR044974 GO:0006952
Amo12g2188 1567 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 30 495 - -
Amo12g2188 1567 SUPERFAMILY "Winged helix" DNA-binding domain 901 1007 IPR036390 -
Amo12g2188 1567 ProSiteProfiles TIR domain profile. 493 660 IPR000157 GO:0007165
Amo12g2188 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 925 IPR027417 -
Amo12g2188 1567 Gene3D - 184 345 IPR027417 -
Amo12g2188 1567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 451 IPR027417 -
Amo12g2188 1567 SUPERFAMILY L domain-like 1019 1322 - -
Amo12g2188 1567 Gene3D - 17 183 IPR035897 -
Amo12g2188 1567 Pfam TIR domain 495 658 IPR000157 GO:0007165
Amo12g2188 1567 Pfam TIR domain 20 180 IPR000157 GO:0007165
Amo12g2188 1567 PRINTS Disease resistance protein signature 865 879 - -
Amo12g2188 1567 PRINTS Disease resistance protein signature 1174 1190 - -
Amo12g2188 1567 PRINTS Disease resistance protein signature 695 710 - -
Amo12g2188 1567 PRINTS Disease resistance protein signature 772 786 - -
Amo12g2188 1567 Gene3D Ribonuclease Inhibitor 1001 1363 IPR032675 -
Amo12g2188 1567 Pfam NB-ARC domain 675 905 IPR002182 GO:0043531
Amo12g2188 1567 Pfam NB-ARC domain 199 440 IPR002182 GO:0043531
Amo12g2188 1567 Gene3D - 830 914 IPR042197 -
Amo12g2188 1567 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 505 1504 - -
Amo12g2188 1567 Gene3D - 358 448 IPR042197 -
Amo12g2188 1567 SUPERFAMILY Toll/Interleukin receptor TIR domain 494 637 IPR035897 -
Amo12g2188 1567 Gene3D - 494 665 IPR035897 -
Amo12g2188 1567 SMART till_3 19 157 IPR000157 GO:0007165
Amo12g2188 1567 SMART till_3 494 634 IPR000157 GO:0007165
Amo12g2188 1567 Gene3D - 666 825 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2188 Amo-Chr12 100842005 100849267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2188 20 493 WRKY Transcription Factor Family AT4G12020 25.208 2.32e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2188 - - ahf:112749517 3037.28