Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2187 ATGCCTTCAAAATCCACCACCACCACAAGTAGTTCATCATCAGAGCGAAGATGGATCTACGATGTGTTCTTGAGTTTCAGAGGAACCGACACTCGCACTATCTTCATTTCTCATCTCTACAACTCCCTCACAAACGCAGGAATCTACGTTTTCAAGGACAACGAGGAGCTTCGCAAAGGAGGCCAGGTTTCATCGTTACTCATGCAAGCAATCCAAGTTTCTAGAATCTCCATCGTTGTTTTCTCAAAGAACTACGCGAACTCCAAGAGTTGTCTGAAAGAGCTGCAGAGAATTATGGATTGTCGAAGAAGCATAGGCCAAGTTGTTTTTCCTGTTTTCTACAACGTAGAACCCTCTCATGTGCGTCATCAGAGAGGTGCCTTTGGAAGAAGCTTTCAGGATCTTAAGAAAACAATTTCAAAGAACAAAGCTCAACTTTGGGGTACTGCGCTTCGTGATGCTGCTAGTTTGACCGGATTTCATCTCAATAATTCCAGGAATGAAAGTGAAGATATCAATAAAATCATTGAAACTATCACTGATTCGCTGGACAATACAGTCTTGTTTGTTGCACAACATCCAGTTGGAGTACAACCTCGTGCTCAACATGTGATTAAACTATTGAACTACCAAGAATCAAAAGATGTCATGCTATTGGGGATCTTGGGAATCGGAGGGATTGGGAAAACAACCATTGCCAAAGCCATTTACAATCAGATTCACCCCCATTTTGAGTCTTATTGCTTTCTTTCAAACATCAGAGAATTCTGGGAGCAGAGTACTACCAGTCAAGTGTATTTACAAGAAAGGCTTCTTTCTGATATTTATAAAACAACAAAGATCAAAATACATAACATTGAATCAGGCATATTCATTTTGCAACAAAGGCTTCGTCATAAACAAGCACTCCTCATACTCGATGATGTTGATAAGATAGAGCAACTAAAAGCCTTGTGTGGAAGCCGCGAATGGTTCGGTCCTGGAAGTAGAATAATCATCACAACAAGAGATGAACATTTACTCAAACTGCTCCAGGTTGATCACATATCTAGAATGCCGGAAATGGATCAAGACGAATCTATTCAACATTTCAGTTGGCATGCATTCAAACAACCATGTCCTAGAGAAGATTTCGATCAACTTTCTAGAAATGTGGTTGCATATTGTGGAGGACTACCTTTAGCTCTTGAGGTTATTGGGTCATTTTTGTTTGATAAGAAAGTAAGAGAATGGGAAAGTGTGGTGGATAAGCTGAAAAGAATTCCCAATGATCAAGTACAGAGAAAGTTGAGAATAAGCTTTGATAGTTTGAATGATGATACAGAGAAAGAAATATTTCTTGACATTGCGTTTTTCTTTATTGGGATGGACCGAAATGATGTAGTACATATTTTAGATGAATATGATGCTGCGATTGGAATCAGTGTTCTTGTAGATCGAAGCCTTGTCACCATTGACAATAATAACAAGCTTGGAATGCATGATTTGCTACGAGATATGGGGAGAGAAATTGTTCGCGAGAAATCACCAAAGGAGCCAGAGGAACGTAGCAGATTATGGTTGCAAAAAGATGTGTACCATGTATTGTCAAATCATATGTTGACCAATTCGGTTAGTTTGGAGGCAAAAATGTTTAAGATGATGAAGAGACTTAGATTACTTCAACTTGCTGGTGTGCAACTAGATGGAAATTTTGAGGATCTTCCGAAACATCTAAGATGGCTTCATTGGCATGAATGCTATTTGAAGTACATACCTTCCAACTTTGATCAAGCAAGTTTAGTTGCCATTGAATTAGAATTCAGCAATCTCAAGTTTGTGTGGAAAGAGGCCAAGGGTTTGATGACAACAACCAATGAGTTTAGTGACAAGTATTGGTTAACATTCGGTTCCAAAGGTTCTTCTGTGGTATTCGAAGTCCCTCAAATGAATGGGTGCAACTTGAAGGCAGTGACATTGCGTATTCTTTATTCTTCTTCCTCAGAAACCATCTTATCAGAATGTCTTAAAAACGTGTTAATCATAAATTACACAAAGTCCACCATTCAAGTCTATAAACAAGACACACTAGCCTCTCTTGAAGATGAGGAGGGAAAAACCATAACTTCACATATAGAACCCGGTAATAAAGTGGAGATTCTTCTTGTTGGTTACAAATTCATTGTGAAGAGAACAACAGTTTATCTGATATATGATGAACCGGTTGACCACTATGCGGAGCACTATCATGCGGATGTTATTGTTTCAAGTGATAATTACATTATTTCTAGTGATAATAATGATATGGAAAGTGATGAATGTTCTAGTGTTTCTGGTGGTGGTCATGATAGGTCAAAGAAGAAATATTCATGTTTCTATTGGTGTTGGAGATAA 2373 0.3847 MPSKSTTTTSSSSSERRWIYDVFLSFRGTDTRTIFISHLYNSLTNAGIYVFKDNEELRKGGQVSSLLMQAIQVSRISIVVFSKNYANSKSCLKELQRIMDCRRSIGQVVFPVFYNVEPSHVRHQRGAFGRSFQDLKKTISKNKAQLWGTALRDAASLTGFHLNNSRNESEDINKIIETITDSLDNTVLFVAQHPVGVQPRAQHVIKLLNYQESKDVMLLGILGIGGIGKTTIAKAIYNQIHPHFESYCFLSNIREFWEQSTTSQVYLQERLLSDIYKTTKIKIHNIESGIFILQQRLRHKQALLILDDVDKIEQLKALCGSREWFGPGSRIIITTRDEHLLKLLQVDHISRMPEMDQDESIQHFSWHAFKQPCPREDFDQLSRNVVAYCGGLPLALEVIGSFLFDKKVREWESVVDKLKRIPNDQVQRKLRISFDSLNDDTEKEIFLDIAFFFIGMDRNDVVHILDEYDAAIGISVLVDRSLVTIDNNNKLGMHDLLRDMGREIVREKSPKEPEERSRLWLQKDVYHVLSNHMLTNSVSLEAKMFKMMKRLRLLQLAGVQLDGNFEDLPKHLRWLHWHECYLKYIPSNFDQASLVAIELEFSNLKFVWKEAKGLMTTTNEFSDKYWLTFGSKGSSVVFEVPQMNGCNLKAVTLRILYSSSSETILSECLKNVLIINYTKSTIQVYKQDTLASLEDEEGKTITSHIEPGNKVEILLVGYKFIVKRTTVYLIYDEPVDHYAEHYHADVIVSSDNYIISSDNNDMESDECSSVSGGGHDRSKKKYSCFYWCWR* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2187 790 Pfam TIR domain 20 183 IPR000157 GO:0007165
Amo12g2187 790 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 624 724 IPR044974 GO:0006952
Amo12g2187 790 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 606 IPR044974 GO:0006952
Amo12g2187 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Amo12g2187 790 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 624 724 - -
Amo12g2187 790 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 29 606 - -
Amo12g2187 790 Gene3D - 13 188 IPR035897 -
Amo12g2187 790 ProSiteProfiles TIR domain profile. 18 183 IPR000157 GO:0007165
Amo12g2187 790 SMART till_3 19 157 IPR000157 GO:0007165
Amo12g2187 790 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Amo12g2187 790 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Amo12g2187 790 Gene3D - 189 349 IPR027417 -
Amo12g2187 790 Pfam NB-ARC domain 202 424 IPR002182 GO:0043531
Amo12g2187 790 PRINTS Disease resistance protein signature 389 403 - -
Amo12g2187 790 PRINTS Disease resistance protein signature 218 233 - -
Amo12g2187 790 PRINTS Disease resistance protein signature 296 310 - -
Amo12g2187 790 Gene3D - 354 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2187 Amo-Chr12 100799837 100808588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2187 20 624 WRKY Transcription Factor Family AT4G12020 29.524 4.26e-66 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2187 - - adu:107475204 814.683