Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2175 ATGTCGGAATTAAATCCAATATTAAAACTATGTTATTTAATTCTTGACAGGTATGTGGGTTTGGGGGATTCAGAAGATGACATGCAAGTTTTCTACTACTTTATTAAGTCAGAGAATGATAGTAAGAATGACCCTCTTTTGCTATGGCTCTCTGGTGGTCCCGGTTGTTCTTCAGTTTGCGGCTTTATTTATGAAATAGGCCCAATGAAATTAAAAGTTGAGGAATATGATGGGAGCTTGCCTAAGCTTATCTCGAGGCCACAGTCATGGACAAAGGTGGCTAACATTATTTTTGTGGATTTGCCAATGGGAACTGGCTTCTCTTACGCCAAAAATGTCATTCCCCATCGAAGTGACTGGAAGGTTGTTCACCAAACCCATCGATTTATTAGAAAGTGGCTTGCTGAGAACCCGGAATTTCTTTCAAATAAGTTCTACATGGCAGCTGATTCATACTCCGGCATTCCTGCTCCTCCTATTATTCAAGAGATCGCTGATGGAAATGAAAGAGGTCTCAAACCCCGGATAAATCTCCAGGGATATATACTAGGAAACCCAGTAACATCAGGATTAGAACATAATGATCAGATCCCATATGTTCACGGAATGGGACTTATCTCTGATGAACTCTATTGGTCCTTGCAAAATACTTGTCACGGCAACATTATAAATGTGGATTCTACGAACAAACCGTGTCTAAATGACATGCAGTATTATTATGAGCTACTTGAAAATATTGAGTTGTTAAACCTTTTGGAGATATATTGTGTTGATGAGAATATCAAAGGAACAAGACAGAACCCCAGGAGATCTCTGGCTCAGAAGATAAAGGCACCTTTGAGTTCTCCGGTCACACTGCCGGATATGCGCTGCCAAATTTATGGTGGCTTCCTTCTTATGGAATGGATAAATGACCCTGCTGTCCGTAAGGCACTGCATATTCGCGAGGGAACTATAGGGAAATGGAACTGGTGCTATGGTGACGATTATGTATTTGAAATCCCTAGCAGCGTTCCATTTCATGCAAACCTAAGTGCCAAAGGCTATCCTTCCTTGATATACAGTGGGGATCACGATGCACTAGTTCCTTTCTCGTCGACTCAACGATGGATAAGGTCTCTAAATTACTCCATTCTAGATGATTGGAGGCCATGGTATTTAAATGACCAAGTTGCAGGATACACGAGGACTTACTCGAATCAAATGACATTTGCAACTATAAGAGGTGGATCGCATACACCTCAAGATACCAAGCCGGACGAAAGTTTTGTCATGTTCGTTAGGTGGATATCTAACAAGCCTCTTTAG 1308 0.4121 MSELNPILKLCYLILDRYVGLGDSEDDMQVFYYFIKSENDSKNDPLLLWLSGGPGCSSVCGFIYEIGPMKLKVEEYDGSLPKLISRPQSWTKVANIIFVDLPMGTGFSYAKNVIPHRSDWKVVHQTHRFIRKWLAENPEFLSNKFYMAADSYSGIPAPPIIQEIADGNERGLKPRINLQGYILGNPVTSGLEHNDQIPYVHGMGLISDELYWSLQNTCHGNIINVDSTNKPCLNDMQYYYELLENIELLNLLEIYCVDENIKGTRQNPRRSLAQKIKAPLSSPVTLPDMRCQIYGGFLLMEWINDPAVRKALHIREGTIGKWNWCYGDDYVFEIPSSVPFHANLSAKGYPSLIYSGDHDALVPFSSTQRWIRSLNYSILDDWRPWYLNDQVAGYTRTYSNQMTFATIRGGSHTPQDTKPDESFVMFVRWISNKPL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2175 435 PRINTS Carboxypeptidase C serine protease (S10) family signature 99 109 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 158 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 PRINTS Carboxypeptidase C serine protease (S10) family signature 86 98 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 PRINTS Carboxypeptidase C serine protease (S10) family signature 402 415 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 Pfam Serine carboxypeptidase 23 432 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 432 IPR001563 GO:0004185|GO:0006508
Amo12g2175 435 Gene3D alpha/beta hydrolase 12 435 IPR029058 -
Amo12g2175 435 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 10 432 - -
Amo12g2175 435 SUPERFAMILY alpha/beta-Hydrolases 18 434 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2175 Amo-Chr12 100199011 100204407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2175 302 435 Calmodulin-binding Proteins AT2G22960 61.481 7.15e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2175 K16296 - gmx:100780069 588.571