Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2161 ATGGATGATTCAACCTCAGATTGTCATCTGAATCCAGGCAAAGTGGATTATGAATTTGAATTTAATGAAGTTCCTGAGACGCTCGGGTGTAGATCAGATCTTTTTTGGGTGTATTATATCAGACATGATTGGCCTCTCTCTGTTGTTGATGACCAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGATGGAAAATTTTACAAGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGATTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCTTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGGTCACCGCGAGGCAGGGATGAGAAGCGCACAAAGGAGTGAGAGCATGCATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCCGAGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCACACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGTATTAACGAATTCCACTCTAGGCTATTCAGTATACGAAGTCGAAGAACAAGTTTCGAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTCGCAGTCGAGGTAAAATGCCAATGTTTATTATTCGAGTCGAGAGGAATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCACCGAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTTTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGAAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAATGTCATGGCTGAAATGGAATCATTAAAAGCCAAAAGAAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAACTTGTTTGATGCCGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTTGCTGTATAG 1524 0.435 MDDSTSDCHLNPGKVDYEFEFNEVPETLGCRSDLFWVYYIRHDWPLSVVDDQLVPKVGMTFTTLEDDGKFYKNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTADLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAAAGGHREAGMRSAQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQVLTNSTLGYSVYEVEEQVSSSIFNKFVVTYDSVAVEVKCQCLLFESRGILCRHALSVLSFERVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLKELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPAAGDNSFAV* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2161 507 PANTHER OS03G0843700 PROTEIN 50 171 - -
Amo12g2161 507 PANTHER OS03G0843700 PROTEIN 205 429 - -
Amo12g2161 507 Pfam FAR1 DNA-binding domain 69 154 IPR004330 -
Amo12g2161 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 205 429 IPR031052 GO:0006355
Amo12g2161 507 ProSiteProfiles Zinc finger SWIM-type profile. 308 344 IPR007527 GO:0008270
Amo12g2161 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 171 IPR031052 GO:0006355
Amo12g2161 507 MobiDBLite consensus disorder prediction 412 448 - -
Amo12g2161 507 SMART 26again6 319 346 IPR006564 GO:0008270
Amo12g2161 507 MobiDBLite consensus disorder prediction 420 434 - -
Amo12g2161 507 Pfam SWIM zinc finger 309 341 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2161 Amo-Chr12 99915694 99918746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g2161 FAR1 2.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2161 - - adu:110280503 506.523