Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2152 GGGATAGAGCAAAATTGTGGTTGGATTCTCAACCCAAGGAGAGTCTGGATACTTGGGATAAGGTTTCTTGGCAACAACCGTCTGCAGGGAACCATCATCAGCGAAATCTGCAAAATCAAGCAGCTGAGTGAGTTGTACATAACTGAGAACAAGCTAATTTCTGGAGAGGTTCCAACTTGCTTTGGTAATCTTACTTCTCTAAGAAAACTTTACTTGAACTCCAACAAACTCAGTAAGGTGCCTTCTTCTCTTTGGAGCCTCAGAGACATTCTTGAGGTGAACTTGTCTGACAATGCTTTAACTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACTTTCTTGGATCTATCAAAGAATATGATCTCAGGAAGCATTCCTAGGGCCATTTCTGGATTGCAAAATTTGCAAATTCTCAACTTATCACAAAATAAATTGTCACTTCATTATCTTGAATTCATCAATCTTTCTCATAATAGTTTGGAAGGAGAGATTCCGAGTGGTGGACCTTTCAAAAATTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCCAGATTACAAGTCCCAGCATGCAGCGTTGAAGAAAGAATGGTGGTGATACTAATGAAGGAACATTATCAGCATTACCAGCATGTAGAATGTGAAGCAATGCGCAATCTGAGCCATCGAAATCTCATGAAGATCATAGGTTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACCATTGTTTGGACTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTGCATCATGGATCTTCACCTATAGTGGTTCATTGTGATGTCAAACCTTGTAATGTCTTATTGGATGAAGACATGGTTGGCCATGTCAGTGGCTTTGGCATTGCCAAATTGCTTGGCGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACTGGAGTTTGGATCCAAAGGGATTATCTCTACAAAGGGAGATGTATACAGTTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTGAATCATTGTCACGTGCAATTGATCGAGTTGTGGATTCCAACTTGTTACAAGATGAAGGTCACCACCATGTTGATGACATAATAGCATCTACATCATCTATCTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAACGAATGAACATGACAGATATTGCTGCATCATGA 1347 0.3964 GIEQNCGWILNPRRVWILGIRFLGNNRLQGTIISEICKIKQLSELYITENKLISGEVPTCFGNLTSLRKLYLNSNKLSKVPSSLWSLRDILEVNLSDNALTLSLPIEIGNLKAVTFLDLSKNMISGSIPRAISGLQNLQILNLSQNKLSLHYLEFINLSHNSLEGEIPSGGPFKNFTAQSFMFNKALCGNARLQVPACSVEERMVVILMKEHYQHYQHVECEAMRNLSHRNLMKIIGCCSSIDYKLLVMEFMPNGSLERWLYSHNHCLDFLQRLNIMIDVASALEYLHHGSSPIVVHCDVKPCNVLLDEDMVGHVSGFGIAKLLGEGQSKEYTKTMATVGYIALEFGSKGIISTKGDVYSFGIMLMETFTRKKPTDDLFVAGLSMKGWISESLSRAIDRVVDSNLLQDEGHHHVDDIIASTSSILKLALNCCEDLPEERMNMTDIAAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2152 448 Gene3D Transferase(Phosphotransferase) domain 1 256 448 - -
Amo12g2152 448 ProSiteProfiles Protein kinase domain profile. 161 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2152 448 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 219 447 - -
Amo12g2152 448 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 93 201 - -
Amo12g2152 448 SUPERFAMILY Protein kinase-like (PK-like) 207 446 IPR011009 -
Amo12g2152 448 Pfam Protein tyrosine and serine/threonine kinase 210 445 IPR001245 GO:0004672|GO:0006468
Amo12g2152 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Amo12g2152 448 SMART serkin_6 198 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2152 448 SMART LRR_typ_2 64 87 IPR003591 -
Amo12g2152 448 SMART LRR_typ_2 135 165 IPR003591 -
Amo12g2152 448 Pfam Leucine rich repeat 41 100 IPR001611 GO:0005515
Amo12g2152 448 Pfam Leucine rich repeat 110 148 IPR001611 GO:0005515
Amo12g2152 448 Gene3D Phosphorylase Kinase; domain 1 198 255 - -
Amo12g2152 448 SUPERFAMILY L domain-like 23 189 - -
Amo12g2152 448 Gene3D Ribonuclease Inhibitor 11 197 IPR032675 -
Amo12g2152 448 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 23 149 - -
Amo12g2152 448 PRINTS Leucine-rich repeat signature 135 148 - -
Amo12g2152 448 PRINTS Leucine-rich repeat signature 114 127 - -
Amo12g2152 448 ProSiteProfiles Leucine-rich repeat profile. 66 87 IPR001611 GO:0005515
Amo12g2152 448 PANTHER RECEPTOR-LIKE PROTEIN 55 219 447 - -
Amo12g2152 448 PANTHER RECEPTOR-LIKE PROTEIN 55 93 201 - -
Amo12g2152 448 PANTHER RECEPTOR-LIKE PROTEIN 55 23 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2152 Amo-Chr12 99758968 99762748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2152 18 440 Receptor kinase-like Gene Family AT3G47570 31.677 2.69e-53 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo12g2152 PK_Tyr_Ser-Thr 9.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2152 - K04733 ahf:112754658 445.277