Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2144 ATGGACCCTCCGGAAGAAACTGCCACTACCACCCTCGATCACGAAGGAGCTTCCACTGGAGCAGATGCTGCCGCTGACACTGGGAGCGGCGACGAGGGACCGACGGAGATAGCCGAAGCTGGTGGAAGTGGCGGCGGTGGAAGTAACAGAGACAGGGTGAAGGGGCCTTGGTCGCCAGAAGAGGACACCATTTTAAGCCGTCTGGTGAGCAAGTTTGGTGCCAGAAACTGGAGCCTCATCGCACGTGGGATCGCCGGGAGATCGGGCAAGTCCTGCCGCCTAAGGTGGTGCAACCAGCTCGACCCCGCCGTTAAGCGCAAACCCTTTACCGATGAGGAGGATCGTATCATAGTTGCTGCTCATGCAATTCATGGGAACAAATGGGCAGCCATAGCCAGACTTCTTCCAGGAAGAACAGATAATGCCATTAAAAACCACTGGAATTCCACTTTGAGGCGTCGAGGAGTTGAGCATGATAAGATCAAGGTAGAATCTAGTAACATGGTGGAAGATGTTAGCCTTGACAAAGCCAAAGCATCATCAGAAGAAACACTTTCATGTGATGTTAATTCATTAAGATCCTCTGAAGGAAGAGATGTTAGTTCTGCAGAGGCTATGGATGATAAATACGAAGAAAAATCACGGATGGAGGGTCAATTGTACCATGAAGTCAAGGATCCTCCTACCCTTTTTCGGCCAAAGGCACGAATTAGTGCTTTTAGCGTATATCACACTGCTGATGGTTTCCAACCTTCAACATCAACTCAAAGACAAATTCAGGGACCCATCTTACAATCATCAAAACCAGATAGAGAAATTTGCAAAATGCTTGAAGGAATTTACAGTGACCAATCAGTGCCTCACCAGTGTGGCCACGGTTGTTGTGGTGCTCCAAATGGTAAAAAATTCAAAAGCTCTTTGTTGGGTCCAGAATTCATCGAATTCTCCGAACCTCAATCTTTCCCAAGTTTTGAGTTGGCTGCAATTGCTACAGACATCAGCAACCTTGCTTGGCTTAAAAGCGGATTGGAGAATAGCAGTGTTAAAATGATGGGAGAAACAACCAGCAGAGTAGTTTCTAATGGCTCTCAAGTGCATATTGGTCATTAG 1110 0.4739 MDPPEETATTTLDHEGASTGADAAADTGSGDEGPTEIAEAGGSGGGGSNRDRVKGPWSPEEDTILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKIKVESSNMVEDVSLDKAKASSEETLSCDVNSLRSSEGRDVSSAEAMDDKYEEKSRMEGQLYHEVKDPPTLFRPKARISAFSVYHTADGFQPSTSTQRQIQGPILQSSKPDREICKMLEGIYSDQSVPHQCGHGCCGAPNGKKFKSSLLGPEFIEFSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGETTSRVVSNGSQVHIGH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2144 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 155 IPR017930 -
Amo12g2144 369 Pfam Myb-like DNA-binding domain 57 114 - -
Amo12g2144 369 SMART sant 105 153 IPR001005 -
Amo12g2144 369 SMART sant 53 102 IPR001005 -
Amo12g2144 369 MobiDBLite consensus disorder prediction 200 215 - -
Amo12g2144 369 CDD SANT 108 151 IPR001005 -
Amo12g2144 369 Gene3D - 53 105 - -
Amo12g2144 369 PANTHER - 5 346 - -
Amo12g2144 369 ProSiteProfiles Myb-like domain profile. 49 100 IPR001005 -
Amo12g2144 369 SUPERFAMILY Homeodomain-like 51 147 IPR009057 -
Amo12g2144 369 MobiDBLite consensus disorder prediction 1 58 - -
Amo12g2144 369 MobiDBLite consensus disorder prediction 187 215 - -
Amo12g2144 369 CDD SANT 56 98 IPR001005 -
Amo12g2144 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 104 IPR017930 -
Amo12g2144 369 PANTHER MYB PROTEIN-RELATED 5 346 - -
Amo12g2144 369 Gene3D - 108 154 - -
Amo12g2144 369 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2144 Amo-Chr12 99629206 99632344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2144 40 369 MYB Transcription Factor Family AT3G09230 53.666 3.58e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g2144 Myb_DNA-bind_6 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2144 K09422 - gmx:100813406 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2144 12 99629206 99632344 Amo12g2144 12 99629206 99632344 ECH