Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2143 ATGTCAAGTATTCAAATGTCTCATGTGGATTTGGAACAAGGAAGAATCCTCCACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGGCTCATGCTACTCCCATTTCTACTCCACAAATGGTGGTGGATCCTACGATGAAGATTGCTGCTCCTATGGTGGAGCCTCAAATGTTGCAGATGGTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGGGTACCTGAGATTAAGGTGCATTTGGCCACCAACAATAAGGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAGGTGATGATGGGAATAATGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCATACAATTGCACGGAATGTGTATTCAGCAAGTGAGGACACAACAGAGGCATTGAGTGACATTAACAACAATAATATTAGTGTCACTGTTGGTTCAGCAGCATCCACAACAATCTCAGCACCTTCATCATCATCATCAGAAACTAGAAGATTTTGGCATGGCCATCGTTTCCTCAATTTTCTCCTTGCTTGTATGGTCTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTCTTAA 729 0.4225 MSSIQMSHVDLEQGRILHHHHHHHSSVTGSDISLCFSDADDGGSCYSHFYSTNGGGSYDEDCCSYGGASNVADGDDDDCSVEIEIESGVPEIKVHLATNNKVESRDCRICHLGLEGDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEDTTEALSDINNNNISVTVGSAASTTISAPSSSSSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2143 242 PANTHER OS01G0850200 PROTEIN 5 241 - -
Amo12g2143 242 SMART ringv_2 106 161 IPR011016 GO:0008270
Amo12g2143 242 CDD RING_CH-C4HC3_MARCH 107 161 - -
Amo12g2143 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 171 IPR013083 -
Amo12g2143 242 ProSiteProfiles Zinc finger RING-CH-type profile. 99 167 IPR011016 GO:0008270
Amo12g2143 242 SUPERFAMILY RING/U-box 101 164 - -
Amo12g2143 242 Pfam RING-variant domain 107 160 IPR011016 GO:0008270
Amo12g2143 242 PANTHER ZINC FINGER, RING-CH-TYPE 5 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2143 Amo-Chr12 99573375 99578002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2143 79 242 C3H Transcription Factor Family AT5G05830 57.927 3.79e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2143 - - gmx:100813946 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2143 12 99573375 99578002 Amo12g2143 12 99573375 99578002 ECH