Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2083 ATGGCGATGGCTCAGGGAACGGGAATAGGGCGTAGCAGCAGCATGAACAGCAGCAGTAGCAGCAGGGTGATAGGGGAGTACATAGTGGGAAGAGAAATTGGTTCGGGTTCGTTCTCGCGTGTGTGGCATGGAAGGCACAAGGTTCATGGCACTGAGGTCGCCATCAAAGAGATCGCAACCCATCGTCTCAATAACAAGCTCCATGATAGCCTCATGTCCGAGATTTTCATCCTCAAGCGAATTAAGCACCCTAACATCATTCGTTTGCACGATATCATTCAGGCTCCTGGTAAGATACATCTTGTGTTAGAGTATTGTAAAGGGGGAGATCTATATTTTTACATTCAACGCCGTGGAAGGGTACAGGAGGCAACCGCAAAGCATTTTATGCAGCAGCTGGCTGATGGCCTTCAAGTTCTCCGGGACAATAATGTAATTCATCGAGATCTAAAACCACAGAACCTCCTTCTGTCAAGAAATGATGAGAAGTCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGATCTCTGCAACCTAGGGGCCTTGCTGAAACGCTGTGTGGGTCACCACTCTACATGGCTCCAGAAATCATGCAACTACAGAAGTATGATGCCAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTTGTAATAGGAAGAACACCTTTTACCGGAAACAATCAAATACAGTTGCTACAGAACATTATGAAATCAACAGAATTGGTATTCCCATCTGATTGCCAAAGTCTCAGTTCTGACTGCAAAGATTTGTGTCAGAAATTGCTACGCCGAAATCCAGTGGAACGTCTTACTTTTGAAGAATTCTTTAACCATCCATTCCTTTCTGAGAAGCAACCAGAACAGATTGAACTGTTGAGGAATAGAAGTTCGTCAAGGCTGGTAGGTGGATTTAGTTCAGCAGAATCTGACCCTTTAAGAAAGACTGAGGAAAATTATCAAGAGGATTGCTTACCATTCTTTCTAGATGATGATTCTAGTGGTCTTGAGGGGAGTCCTTCCTTTTCAAAGAAGTCTTCAATCAAGTCTACCATTGGATTTGATCTAAGTACAAAACTAGATAAACCAGAGCCAGCATCTCCTGTTGCTAACAACATAAATTATACCTCCAGATACAGTAGTGTAACACAGAGACCTGAAAGCACGACTAAAAGATTGGACAACCCTAAAGTATCAGGAAGAAATCTCACTGGTCCTTTAGAACCTCTAGAACAAAGATTTACCGATTCTCATTCAAAAGTTGCAGATTCCCTGGAGAATATTGATCAAGATTATGTTCTTGTGTCTGGGCCCCCTATTGATGTGTCTTCATCTTCAGTGAGTGCTTCAAAGCCAAGCCATTCCCCATTTAAGTCAAGCAGTCTTCCTCAAGAGTCTTCAAAAACAATCACTAGATTAAGTGCTCCAATGCCAATTGTTGGAGTTTCTACCAGTAGCACATGCCAGATTGGAAGCTCAGAAAGTCAGGACTCTGCTCCTGGGACATCACATGGATCAATGGATACAGGTGATGAACAGCCGTCAGGCCATTGCATGACAAGGATTAAATCATTGCAACAGTGTGCATCTGCCATCACAGAATTAGTTAATGAAAAGATGGAGTCAGGAAAGCCGCTAGAAGCATTTTCTGTTCAGCTTGTAATTCTTGCCATTTGGAAGCAAGCACTGCATATATGCCATACACGAGCTGCCTCAGCTATGGAAGGTAGTCCAAATCAAGAAACTTTAAGATACAGGAGGACTGCCAGCAAGAAGCATGGTAGTTCTGATTCAGAAGAATGCTTTGACGGAAACACCCAAGGGTCTAAGGATATGCTAGCTCAAATTGAAAGTGAGTTTCTGAAGGAATTTGAGCATGCTGAAGAACTTGCCAAAGCCATTGAACCTGGAAACACAGAGATGCCAGATGCAATGGAGACAATTTTTCAATCTGCCCTTGCTTTTGGGAAACATGGGGGTGTGGAAGAGCTCATGGGAGACATGGAAAGTGCAGCTGCATTGTATTCGAAGGCAGTCCGTCTCTTACTCTTCCTACTAGTTGAAGCACCATCCTTGATTCTCAATCCTCCATTCTCTCTGACCAACTCGGACCGTTACAGGCTACGGAATTACATCGATATTCTCAATAACAGGCAAGGCTATTCGAGATCGCAGCGGATGACACTTCTGAAATGTGATGACAGTCGAGGCATCTTCAAAGAAAAGTTTTAG 2238 0.4352 MAMAQGTGIGRSSSMNSSSSSRVIGEYIVGREIGSGSFSRVWHGRHKVHGTEVAIKEIATHRLNNKLHDSLMSEIFILKRIKHPNIIRLHDIIQAPGKIHLVLEYCKGGDLYFYIQRRGRVQEATAKHFMQQLADGLQVLRDNNVIHRDLKPQNLLLSRNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVIGRTPFTGNNQIQLLQNIMKSTELVFPSDCQSLSSDCKDLCQKLLRRNPVERLTFEEFFNHPFLSEKQPEQIELLRNRSSSRLVGGFSSAESDPLRKTEENYQEDCLPFFLDDDSSGLEGSPSFSKKSSIKSTIGFDLSTKLDKPEPASPVANNINYTSRYSSVTQRPESTTKRLDNPKVSGRNLTGPLEPLEQRFTDSHSKVADSLENIDQDYVLVSGPPIDVSSSSVSASKPSHSPFKSSSLPQESSKTITRLSAPMPIVGVSTSSTCQIGSSESQDSAPGTSHGSMDTGDEQPSGHCMTRIKSLQQCASAITELVNEKMESGKPLEAFSVQLVILAIWKQALHICHTRAASAMEGSPNQETLRYRRTASKKHGSSDSEECFDGNTQGSKDMLAQIESEFLKEFEHAEELAKAIEPGNTEMPDAMETIFQSALAFGKHGGVEELMGDMESAAALYSKAVRLLLFLLVEAPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMTLLKCDDSRGIFKEKF* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2083 745 CDD STKc_ATG1_ULK_like 33 283 - -
Amo12g2083 745 ProSiteProfiles Protein kinase domain profile. 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2083 745 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 17 719 IPR045269 GO:0004674|GO:0006914
Amo12g2083 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Amo12g2083 745 MobiDBLite consensus disorder prediction 365 410 - -
Amo12g2083 745 MobiDBLite consensus disorder prediction 486 519 - -
Amo12g2083 745 MobiDBLite consensus disorder prediction 486 512 - -
Amo12g2083 745 Gene3D Transferase(Phosphotransferase) domain 1 17 326 - -
Amo12g2083 745 SUPERFAMILY Protein kinase-like (PK-like) 23 445 IPR011009 -
Amo12g2083 745 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Amo12g2083 745 MobiDBLite consensus disorder prediction 444 470 - -
Amo12g2083 745 MobiDBLite consensus disorder prediction 371 399 - -
Amo12g2083 745 SMART serkin_6 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2083 745 Pfam Protein kinase domain 28 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2083 745 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1B 17 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2083 Amo-Chr12 97300009 97309003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2083 23 294 CBL-interacting serine-threonine protein kinases AT2G30360 37.050 1.25e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Amo12g2083 Pkinase 9.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2083 K08269 - gmx:100791596 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2083 12 97300009 97309003 Amo12g2083 12 97300009 97309003 ECH