Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2069 ATGGAACAGGATCAGTGTTGGACGATGCAAGCAAAGAAAAAATTTTCTTTAGGATACAATAATAATCTTATCACCACCAACAATAACGATCGTTCTTCCTATGACGAATCGTCATGGGAAGAACAAGCCTTTGCCGAAGACGCGGCCGGTGCCCTTGTTGGTGGATGCATATGGCCGCCAAGATCATATTCTTGCAGCTTTTGTAGGAGAGAGTTTAGGTCAGCTCAGGCTCTTGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAAGCAACAACAACCCTCTAGTCCCAACAACAAGAATAGTAATAGTAATAATAATGATGAAGTTTTTCATAGCACACCTTTGGGATCATCATATAATACCCTATTATACCCCTCTACTACTTCTTCTACTACTCTTTGTGGATTAGCTTTTAAAACTAACCCTAATTCTGATCTTGTTATTCCTTCAGCTTCTTCTTCGTCACTACCCTCTACTCCCTCTTCTTCCAAGGCTTTGTTATTAGCTCCTCCATCATTATTTCCACCACTTTGCAATAATTCTTCTTCTATTCTTCTTCACAAGAATTCCCAAGTCTATTGTTCTCATCCATGGTCAAACTTTGGTGGAGATAATCAAAGGTTGTGTTCTAATAATAAGTTCTTCAACCCTGAAGAAGCTGATGTTGAGAAAGTCTCACAAGGTAAGGGAAAAAATGATGAAGGAGAAGAAGAAGAAGACGGCGATGACGACGACCATGTGGGTGTGAGCTTGAACTTGGTTGTTTGTAGAAGTCATCATCAATTTGAGGCTAAAGAAGAAGAACATATAAGTTTCAAGAGGAGGAAAACAGAAGCTTCATCAATTCCACCATTTTTACCAAACTCAACAAGCTCAGTTGATAGACATAATCATCATCACATGCATCATCCGAAGATGATTGAATTAAACCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAGCTGCAGCTCCGAGGTATAG 1005 0.401 MEQDQCWTMQAKKKFSLGYNNNLITTNNNDRSSYDESSWEEQAFAEDAAGALVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQPSSPNNKNSNSNNNDEVFHSTPLGSSYNTLLYPSTTSSTTLCGLAFKTNPNSDLVIPSASSSSLPSTPSSSKALLLAPPSLFPPLCNNSSSILLHKNSQVYCSHPWSNFGGDNQRLCSNNKFFNPEEADVEKVSQGKGKNDEGEEEEDGDDDDHVGVSLNLVVCRSHHQFEAKEEEHISFKRRKTEASSIPPFLPNSTSSVDRHNHHHMHHPKMIELNPSSIEELDLELRLGSCSSEV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2069 334 MobiDBLite consensus disorder prediction 223 238 - -
Amo12g2069 334 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Amo12g2069 334 SMART c2h2final6 63 85 IPR013087 -
Amo12g2069 334 MobiDBLite consensus disorder prediction 223 250 - -
Amo12g2069 334 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 331 - -
Amo12g2069 334 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Amo12g2069 334 PANTHER OS07G0101800 PROTEIN 1 331 - -
Amo12g2069 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Amo12g2069 334 MobiDBLite consensus disorder prediction 79 115 - -
Amo12g2069 334 MobiDBLite consensus disorder prediction 94 115 - -
Amo12g2069 334 MobiDBLite consensus disorder prediction 285 304 - -
Amo12g2069 334 Pfam C2H2-type zinc finger 63 87 - -
Amo12g2069 334 Gene3D Classic Zinc Finger 60 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2069 Amo-Chr12 96866278 96867775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2069 31 188 C2H2 Transcription Factor Family AT2G37740 43.373 2.71e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2069 - - adu:107475041 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2069 12 96866278 96867775 Amo02g2257 02 73855411 73856894 hybridization