Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2034 ATGATGTTGAATCGCGGGTCAAATGTTTCGGCCGAAGGGGGTGGAGATGAGCTGTATTCGCAGCTATGGAAGGCATGTGCGGGACCACTGGTGGACGTTCCTCGTGTTGGAGAGAGGGTCTTCTACTTCCCTCAGGGGCACATGGAACAATTAGAGGCATCAACGAATCAGGAATTGAATCAGAGGATTCCGTTGTTCAAACTTCCCTCGAAGATCCTTTGTCGCGTCGTGAACATTCATTTACTGGCTGAACAAGAAACTGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAATCTAATCAAGCTGATGAGCCTACGAGCCCCGATCCGTCCCCTGCTGAACCAACAAGGCCCACAGTTCACTCGTTCTCCAAAGTTTTAACTGCTTCAGATACCAGCACCCATGGCGGCTTTTCTGTTCTCAGGAAACATGCCACAGAGTGCCTTCCTGCTTTGGACATGTCCCAACCAACACCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTCAAGCATATATTTCGAGGTCAACCACGCAGACACTTGCTCACAACAGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCTGGAGACACCTTTGTATTCTTGAGAGGGCAGAATGGGGAATTGCGCGTAGGAGTGCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCATCATCTGTAATTTCCAGTCAGAGCATGCACCTCGGTGTGCTTGCTACTGCCTCTCATGCTGTTGCTACTCAGACACTTTTCGTAGTTTATTATAAGCCACGCACGAGCCAGTTCATCATCAGCCTCAACAAGTATTTGGATGCTGTCAACAACAAATTTAGTGTTGGGATGAGGTTTAAGATGAGGTTCGAAGGGGATGATTCTACAGACACTGATAAAAGATTTTCGGGTACCATTGTTGGATTGGAAGATATATCTCCTCATTGGGAAAATTCTAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCCCCATGGGAGATGGAACCCTACGTGGCTCCTGCTCTTACATCCTCAGTTCAACCTGCTGTTGTAAAGGCCAAAAGGCCTCGACCACCAAGTGAACATCCCGATCTCGACACCCAATCGGCTGCCTCAGTTTTCTGGGATTCAGGTCTTACACAGGCTGATATGACACAGCATAGTGTGATGGCCGAAAGTAAAAGGAGTGATACTACCAGCGTGTGGCATCATAAGCAGATCGATATGAATAGTAAAAGCAACAGCAATCTGATGTCAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCCCCCCATTCTTCTTGTCCTTCGCAATTATTTCAGGACACAATGGATGACAGCAAGAGCGTCTCAGCTTGGCCTGCTCCAAATCCACACTCGTCTAGATTGAACAATGATCATGTGCATGATCAGGTTGACAAGGAAAACAAAGCTGAGACTGCTACGAGTTGTCGACTTTTTGGCATTGACCTTATTGATCATTCCCGGAACTCGTCTGCTGTAGAGAAGGCGGCTGCACAGGCGGTAAACGTTCACAGTTTCACCTCTGAAGGCTGTGTGAGCACAGTTTCCAAAACTGAGGCAGGTCAAAAGTCTGATGCCTCGAAGACTGGTAAGGAGAAGAAACAAGAGCAGCAGCAAGTATCGCCAAAAGAGAGTCAGAGCAAGCAGATATGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTCGCAGTAGGTCGTGCCGTGGATCTGACTATGTTGGATGGCTATGAGCATCTTATTGTTGAATTGGAGGAGTTGTTCGACATAAAAGGGCAGCTTCAAGACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAGGGAGATATGATGCTGGTGGGAGACGATCCATGGCCTGAATTCTGCCACATGGTTAGGAGAATTTTTATCTGTTCCAGTCAAGATGTGAAGAAGATGAGCACAGGAAGCAAACTACCAATCTCTTCAATTGAAGAAGGCACTGTAATAAGTTCAGAAACTGCTGAAACATGA 2070 0.47 MMLNRGSNVSAEGGGDELYSQLWKACAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNQRIPLFKLPSKILCRVVNIHLLAEQETDEVYAQITLVPESNQADEPTSPDPSPAEPTRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGQNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDTDKRFSGTIVGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEMEPYVAPALTSSVQPAVVKAKRPRPPSEHPDLDTQSAASVFWDSGLTQADMTQHSVMAESKRSDTTSVWHHKQIDMNSKSNSNLMSRNQTEGSWLSSPHSSCPSQLFQDTMDDSKSVSAWPAPNPHSSRLNNDHVHDQVDKENKAETATSCRLFGIDLIDHSRNSSAVEKAAAQAVNVHSFTSEGCVSTVSKTEAGQKSDASKTGKEKKQEQQQVSPKESQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYEHLIVELEELFDIKGQLQDRNKWEIVFTDDEGDMMLVGDDPWPEFCHMVRRIFICSSQDVKKMSTGSKLPISSIEEGTVISSETAET* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2034 689 MobiDBLite consensus disorder prediction 549 564 - -
Amo12g2034 689 ProSiteProfiles PB1 domain profile. 578 659 IPR000270 GO:0005515
Amo12g2034 689 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Amo12g2034 689 MobiDBLite consensus disorder prediction 100 121 - -
Amo12g2034 689 PANTHER AUXIN RESPONSE FACTOR 13 678 - -
Amo12g2034 689 MobiDBLite consensus disorder prediction 542 578 - -
Amo12g2034 689 Pfam AUX/IAA family 438 662 IPR033389 -
Amo12g2034 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g2034 689 SMART B3_2 124 226 IPR003340 GO:0003677
Amo12g2034 689 Gene3D - 121 225 IPR015300 -
Amo12g2034 689 MobiDBLite consensus disorder prediction 428 453 - -
Amo12g2034 689 Pfam Auxin response factor 250 331 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo12g2034 689 CDD B3_DNA 122 224 IPR003340 GO:0003677
Amo12g2034 689 Gene3D - 285 358 - -
Amo12g2034 689 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Amo12g2034 689 Gene3D - 574 666 - -
Amo12g2034 689 SUPERFAMILY DNA-binding pseudobarrel domain 115 253 IPR015300 -
Amo12g2034 689 SUPERFAMILY CAD & PB1 domains 578 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2034 Amo-Chr12 96056994 96062696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2034 11 671 B3 DNA Binding Superfamily AT4G23980 59.731 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo12g2034 AUX_IAA 7.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2034 K14486 - gmx:100779003 1128.62