Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2020 ATGGCTAGAATGGGAACCACTCTTCTCTACATTGCAACACTGGTCTCTGTTTTTGCTGCAGCCACTGCCAGAATCCCCGGAGTTTACACTGCAGGTTCCTGGCAGGGTGCTCACGCCACTTTCTACGGTGGAAATGATGCATCTGGAACAATGGGCGGTGCATGTGGGTACGGGAACCTATACAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACAGCTCTGTTCAACAACGGGCTGAGCTGCGGGGCATGCTTCGAGATCAAGTGCGACCAGGACCCGCGGTGGTGCAACCCCGGCAGCCCCTCTATCGTGGTAACCGCCACCAACTTCTGCCCACCGAATTTTGCCCAACCCAGCGATAACGGCGGTTGGTGTAACCCCCCAAGGGAACACTTCGACCTCGCTATGCCAATGTTCCTCAAGATCGCTCAGTACCGCGCTGGAATTGTACCCGTCAGCTACCGCCGGGTGCCATGCAGGAAGATAGGTGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTCTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTCCGCGTGAGCATAAAGGGATCCAAAACTGAATGGAACCCCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAATGCTGATTTAGTGGGCCAGGCCCTCTCCTTTAGGGTTAAAGGCAGTGACAGACGCGCCTCTACCTCATGGAACGTGGCACCATCTAATTGGCAGTTTGGCCAAACCTTCATGGGCAAGAATTTCCGCATCTAA 783 0.5492 MARMGTTLLYIATLVSVFAAATARIPGVYTAGSWQGAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIVVTATNFCPPNFAQPSDNGGWCNPPREHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKIGGIRFTINGFRYFNLVLITNVAGAGDIVRVSIKGSKTEWNPMSRNWGQNWQSNADLVGQALSFRVKGSDRRASTSWNVAPSNWQFGQTFMGKNFRI* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2020 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Amo12g2020 260 PANTHER EXPANSIN-A15 5 259 IPR002963 GO:0009664
Amo12g2020 260 SUPERFAMILY PHL pollen allergen 165 254 IPR036749 -
Amo12g2020 260 SMART dpbb_1 69 156 IPR007112 -
Amo12g2020 260 Gene3D - 166 258 IPR036749 -
Amo12g2020 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Amo12g2020 260 PANTHER EXPANSIN 5 259 - -
Amo12g2020 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Amo12g2020 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Amo12g2020 260 Gene3D - 19 162 IPR036908 -
Amo12g2020 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Amo12g2020 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Amo12g2020 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Amo12g2020 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2020 Amo-Chr12 95220838 95223937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2020 4 260 Expansin Gene Family AT2G39700 81.323 6.72e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2020 - - gmx:100803595 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2020 12 95220838 95223937 Amo12g2020 12 95220838 95223937 ECH