Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2015 ATGGGTGCTTGTTGGAGCAATAGGATTAAGGCTGTGAGTCCTTCCAGCACAGGGTTCACGTCGCGAAGTGTGAGCAGAGATGGTTATGAAATCAGCTCAAATAGTAGGAGCTCATCAGCCTCCATTCCCATGACACCCCGGACCGAGGGCGAGATCTTACAATCTTCCAATTTGAAAAGTTTCAGCTATGCAGAGCTAAAAACAGCCACTAGAAACTTCCGGTCCGACAGCGTCTTAGGCGAAGGTGGATTCGGTTCGGTTTTTAAAGGGTGGATTGATGAGAATTTGCTTGCTACCACAAGGCCAGGAACTGGTGTGGTTATTGCTGTGAAGAGACTCAACCAAGATGGTTTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTTGGACAACTGCAACATCCTAATCTAGTCAAATTGATTGGCTACTGCTTAGAGGACGAGAACCGGCTTCTAGTCTACGAATTTATGCCTAAGGGCAGTGTGGAGAATCATCTCTTTAGAAGAAGTGTTCATTTTCAGCCACTTTCATGGACTCTGCGATTAAAAATAGCCCTCGGTGCTGCGAAGGGTCTTGCGTTTCTCCACAGCACAGAAACTAAAGTCATATACCGAGACTTCAAGACTTCGAATATCTTGCTTGATACTAACTACAATGCCAAACTTTCCGATTTCGGGCTGGCCAGAGATGGACCGACTGGTGATAAGAGCCATGTCTCGACTCGGGTCATGGGAACACATGGATATGCAGCCCCAGAGTATCTAGCAACAGGTCATCTCACTTCCAAGAGTGATGTATATAGTTTCGGAGTAGTTCTTCTGGAAATGTTATCTGGAAGGCGCGCCATAGACAAGAACCGGCCATCCGGAGAACACAACCTAGTCGAATGGGCAAAACCTTACCTTTCCAACAAGCGTAGAGTTTTTCGTGTTATGGACACCCGTCTCGAAGGTCAATACTCGGTTAGCAGAGCTCAAAAGGCCGCCACGCTTGCTTTTCAGTGTCTTGCCATTGATCCTAAGTACAGGCCAAATATGGATGATGTAGTTAGAGAGTTGGAGCAGCTCCAGGATCCAAAGGACGTGTCGAAAAATGGCAATAGGAAGGAGCATCAAGTCCGTGGGTCCGGCCTCGGCCTCGGCCTCCCTGCATCTAGCAAAGGTGGTGCAGACTCTCCAAGGAAGACTTCTTATCCCAGGCCTTCTGCTTCCCCTCTTTATGCCTAA 1233 0.4785 MGACWSNRIKAVSPSSTGFTSRSVSRDGYEISSNSRSSSASIPMTPRTEGEILQSSNLKSFSYAELKTATRNFRSDSVLGEGGFGSVFKGWIDENLLATTRPGTGVVIAVKRLNQDGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDENRLLVYEFMPKGSVENHLFRRSVHFQPLSWTLRLKIALGAAKGLAFLHSTETKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTSKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRVMDTRLEGQYSVSRAQKAATLAFQCLAIDPKYRPNMDDVVRELEQLQDPKDVSKNGNRKEHQVRGSGLGLGLPASSKGGADSPRKTSYPRPSASPLYA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2015 410 MobiDBLite consensus disorder prediction 358 410 - -
Amo12g2015 410 PANTHER OS01G0588500 PROTEIN-RELATED 22 384 - -
Amo12g2015 410 Pfam Protein kinase domain 74 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2015 410 PANTHER KINASE 1B 22 384 - -
Amo12g2015 410 SUPERFAMILY Protein kinase-like (PK-like) 52 358 IPR011009 -
Amo12g2015 410 MobiDBLite consensus disorder prediction 358 373 - -
Amo12g2015 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Amo12g2015 410 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Amo12g2015 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Amo12g2015 410 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2015 410 CDD STKc_IRAK 79 358 - -
Amo12g2015 410 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2015 Amo-Chr12 95122402 95126248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2015 36 355 Glycoside Hydrolase AT3G07070 48.036 1.37e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo12g2015 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2015 - - gmx:100795058 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2015 12 95122402 95126248 Amo12g2015 12 95122402 95126248 ECH