Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1994 ATGTCTGGTGTCTCTGTGTACTACACCATAGACAGTAAATGGCGGCAGCCATTAGCAGCGGTTTCGAAAAGCATTGCTAAATGGCTGGGGTGCCAATTTTGGGTGGTGCGTGCAGATGTGACGTCCTCCACTGTCGCCGCCACCGTCGCCGCTGCTCACGTCGCACGAGCTCCTTCCACCGCCGCTCTCAATGTGTTTGCTCCTTTCGTCGTCACACGAGCTCTCTCGGCCATGCTCTTGTCTTACGAGCTCCCTCCGCCGCCGCTCTCAGGCTGCTTCTTCTCTCCTCGCTGGAGGTCCGCTGAAGGTTACACCATTTATGGTCGAGTGAAGATCCCCAGCAGGCCAGGGGACAAGGCTGTTTGTGGAAACAAAACTAGGACGAATTTGAGTTTTCAAGTGGCCGCAAAGCAGGCGATTTTGGAAGTAGTTCAAGCTGCACCAAACAGCATAGGATGCTATGCAAGAGGGAAGGTTGATGTTTCTGGAAGGGGTCCACCACTGGCTGGAAGGTATGACATGGGAGCTCTATGCATGCATGAGCATTCTGAAAAACTTGAAGGCCTTATCAATGATGCTATAGATAAAGGTTCTGAAATTGTTGCAAGAGGAAGTTTCGGGCCTATTGGTGGAGATGCAGTTAATCAGTATTACCCCTCAACTGTGATTGTTAATAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGGAGTGTGCCGTTCCGACAGATAGCAGGGATTTAATTCCAATTCAAAAATGGAAGTCAATTAACGCTCAGGTGGTTATTGGGACTCCTGGCACCATCAAAAAGTGGATTTCTTTCAAGAATTTGAACCTGACCAGATTGATGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAGGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATTCAATTCTAGCTGCCAGGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGATGCTGTGAAGCAGTATAAAGTGCACTGCCCTGATAAGTTGTCAAAGATTGAGGAAAGAGCCAAGGCTTTGGAAGTTATCCAGTATCTGAAGGAAAAGTATCATGAAGGGAAGTGTAATGTTGCCATTGTTGATGATGGAAAGTTGGACACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCAATTGGAAAGAAAGTAGTTAGTGATGATGATATCATTCCTGAGACAACTCCTGGCCAACTCTTTAGCTCAGGTTACAAAAAATTAGTAGCAGATAAAGGCTTGCAAGATGAGACATACACAGCAGAAAGTGTCGCGCTTATTCAAATTTCTAGAACTGCCATACATAATAACAATGCAGTGCAAGTTGATGCAGTGGCAGCGTCATTGAATTCTGCTGAGTGTTTTGTCCTTCAATCTGGCTCTACAATGTTCACTTGGCATGGCAATCAATCCTCCTTTGAGCAGCAGCAGCAGCTAACAGCTAAAGTTGCGGAGTTTTTAAAGCCTGGAGTTGCTTTAAAGCATGCTAAAGAAGGAACAGAAAGCTCTGCTTTCTGGTTTGCTCTTGGAGGAAAACAGAGTTACACCAGCTTTCTGGTTTGCTCTGCCTTGTCTAATTCCTTTAATTCATCTTTTGATATGACATCCAGTATGGATAGATTGAATGGGCTGAATCAAGGAGGACCAAGACAAAGAGCAGAAGCTTTGGCTGATTTAAACTATGCATTTAAATCATCATCCGGAACCAAAAGTTCTAGCCCTAAGACAACTGGAAGAAGTCAAGGATCATCGCCACCGCCGCCACCTTCAATGTCTTCGGATGAGGACTATGATGATGATGAGGATGAAGATGACACTGAAGACTATAGCTGA 1971 0.4444 MSGVSVYYTIDSKWRQPLAAVSKSIAKWLGCQFWVVRADVTSSTVAATVAAAHVARAPSTAALNVFAPFVVTRALSAMLLSYELPPPPLSGCFFSPRWRSAEGYTIYGRVKIPSRPGDKAVCGNKTRTNLSFQVAAKQAILEVVQAAPNSIGCYARGKVDVSGRGPPLAGRYDMGALCMHEHSEKLEGLINDAIDKGSEIVARGSFGPIGGDAVNQYYPSTVIVNNTEVLRKMGKHTGISSECAVPTDSRDLIPIQKWKSINAQVVIGTPGTIKKWISFKNLNLTRLMILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDAVKQYKVHCPDKLSKIEERAKALEVIQYLKEKYHEGKCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVVSDDDIIPETTPGQLFSSGYKKLVADKGLQDETYTAESVALIQISRTAIHNNNAVQVDAVAASLNSAECFVLQSGSTMFTWHGNQSSFEQQQQLTAKVAEFLKPGVALKHAKEGTESSAFWFALGGKQSYTSFLVCSALSNSFNSSFDMTSSMDRLNGLNQGGPRQRAEALADLNYAFKSSSGTKSSSPKTTGRSQGSSPPPPPSMSSDEDYDDDEDEDDTEDYS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1994 656 PANTHER VILLIN-3-LIKE ISOFORM X1 373 448 - -
Amo12g1994 656 PANTHER VILLIN 373 448 IPR007122 GO:0051015
Amo12g1994 656 SMART VILL_6 324 424 IPR007122 GO:0051015
Amo12g1994 656 SMART VILL_6 470 558 IPR007122 GO:0051015
Amo12g1994 656 PANTHER VILLIN 448 566 IPR007122 GO:0051015
Amo12g1994 656 CDD gelsolin_S5_like 469 560 - -
Amo12g1994 656 PANTHER VILLIN-3-LIKE ISOFORM X1 448 566 - -
Amo12g1994 656 PRINTS Gelsolin family signature 483 503 IPR007122 GO:0051015
Amo12g1994 656 PRINTS Gelsolin family signature 544 563 IPR007122 GO:0051015
Amo12g1994 656 Gene3D - 219 360 IPR027417 -
Amo12g1994 656 Pfam Gelsolin repeat 482 524 IPR007123 -
Amo12g1994 656 Gene3D Severin 361 436 IPR029006 -
Amo12g1994 656 Gene3D Severin 469 563 IPR029006 -
Amo12g1994 656 SMART ultradead3 13 365 IPR014001 -
Amo12g1994 656 MobiDBLite consensus disorder prediction 639 656 - -
Amo12g1994 656 MobiDBLite consensus disorder prediction 610 656 - -
Amo12g1994 656 MobiDBLite consensus disorder prediction 610 626 - -
Amo12g1994 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 344 IPR027417 -
Amo12g1994 656 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 349 IPR014001 -
Amo12g1994 656 SUPERFAMILY Actin depolymerizing proteins 461 562 - -
Amo12g1994 656 Pfam DEAD/DEAH box helicase 227 337 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1994 Amo-Chr12 94339507 94345945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1994 165 233 Aldehyde Dehydrogenase Gene Family AT3G66658 60.870 2.78e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1994 K18655 - aip:110269267 341.273