Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1981 ATGAGCCCAGCGGCCTTCTCAAGTTTGGGAGTCAACTCAACAGCAAATGATGAACTCAGGAAACTAGGCACCGTTGATATTGAATACCAGAGGATTTCATGCAGTTACCCTGGCCAAAACATTGCGATCAAAATTAAAGAGAGTAGCACCAACCCTGGTTACTTGTCTATTGTACTTTTCAATGTTGGTGGAACATGCGATGTCATTGCTATTCAGTTGTCGCAGTCGGGCAGCAACACATGGCTTTCTTTGCAGAGGGTGGACGGTGCAGTTTTTCAGATTTCAAACCCGCCAAGTGGGACCCTCAGATTCAGATTCCAAGTTAATTGCGGTTCTGGACTTCAATGGAGGCTCCCCAAGAATGACATCCCTGCTAACTGGAGGGCTGGTGCCACTTATGACACTGGCATTCAGTTTTAA 420 0.4643 MSPAAFSSLGVNSTANDELRKLGTVDIEYQRISCSYPGQNIAIKIKESSTNPGYLSIVLFNVGGTCDVIAIQLSQSGSNTWLSLQRVDGAVFQISNPPSGTLRFRFQVNCGSGLQWRLPKNDIPANWRAGATYDTGIQF* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1981 139 SUPERFAMILY PHL pollen allergen 40 134 IPR036749 -
Amo12g1981 139 Pfam Expansin C-terminal domain 41 121 IPR007117 -
Amo12g1981 139 PRINTS Expansin/Lol pI family signature 121 135 IPR007118 GO:0005576
Amo12g1981 139 PRINTS Expansin/Lol pI family signature 81 95 IPR007118 GO:0005576
Amo12g1981 139 PRINTS Expansin/Lol pI family signature 22 38 IPR007118 GO:0005576
Amo12g1981 139 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 53 135 IPR007117 -
Amo12g1981 139 SUPERFAMILY Barwin-like endoglucanases 1 38 IPR036908 -
Amo12g1981 139 PANTHER EXPANSIN-B3 1 138 - -
Amo12g1981 139 PANTHER EXPANSIN-B1-LIKE PROTEIN 1 138 - -
Amo12g1981 139 Gene3D - 36 139 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1981 Amo-Chr12 93977516 93979587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1981 1 137 Expansin Gene Family AT4G17030 44.526 1.40e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1981 - - ahf:112802200 155.606