Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1980 ATGCATGCCAAGGTTTGTAATAAGTTTGACCGCTACTTTATTTCCTTTGTGCATGTAGGGTCAATGTGTACTGGTGGTCCACATCATCAATCCAATCCTAAATCATATTATTCCTATGGTCCCAATTGGGCTCACACCACTGATATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATACTGCTTTTACCAGCACTAAGCAGTGCCACTAATAAAGACTACTGCCCTCCTTATAAGAACTCTAGAGCAACCTATTATGGTACCCGTGATGGTTATGGCACTCCAACTGTATCTGGGCTATGGAATGATGGACGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAAAATTGTGCAATGTCAACGGGGTAACAGTGGTGGCAACAGATTATGGTCAGGGAGACAGAACAGACTTCATATTGAGCCCACGAGCCTTTAATAGTTTGGGTGTGAACCCTGATGCATCTAAAGAGCTAAAAAAATACGGTACTCTTGATATTGCATACAAAAGAGTCCCTTGCACATACCCTGGCCGCAACATTGTTGTTAAGGTTCAAGAAAGTAGCAGCAACCCTGGATACTTTGCTGTGGTTCTTCAAAACCTTGGTGGATCATACGATGTCACTAATGTTGAATTGTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGGGTTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAAGGGTCAACTCTTCTTGAGGTTCCAAGTGATTGGTTGTTACGGAACTTATTGGCAAATACCAAAGAAACCTATCCCTGCTGATTGGAAGCCCAAAATGACCTATGACACTGGACTTCAGCTTAAATAA 852 0.4319 MHAKVCNKFDRYFISFVHVGSMCTGGPHHQSNPKSYYSYGPNWAHTTDMELKHQLGLLCVILLLPALSSATNKDYCPPYKNSRATYYGTRDGYGTPTVSGLWNDGRGCGACYQVKCKVPKLCNVNGVTVVATDYGQGDRTDFILSPRAFNSLGVNPDASKELKKYGTLDIAYKRVPCTYPGRNIVVKVQESSSNPGYFAVVLQNLGGSYDVTNVELWEDSRKQWSPLRRVYGAVFDYANPPKGQLFLRFQVIGCYGTYWQIPKKPIPADWKPKMTYDTGLQLK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1980 283 PANTHER EXPANSIN-B3 50 95 - -
Amo12g1980 283 PANTHER EXPANSIN-B3 97 282 - -
Amo12g1980 283 Pfam Lytic transglycolase 101 155 IPR009009 -
Amo12g1980 283 Pfam Expansin C-terminal domain 184 254 IPR007117 -
Amo12g1980 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 278 IPR007117 -
Amo12g1980 283 SUPERFAMILY PHL pollen allergen 182 277 IPR036749 -
Amo12g1980 283 Gene3D - 178 278 IPR036749 -
Amo12g1980 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 101 182 IPR007112 -
Amo12g1980 283 PANTHER EXPANSIN-B1-LIKE PROTEIN 97 282 - -
Amo12g1980 283 PANTHER EXPANSIN-B1-LIKE PROTEIN 50 95 - -
Amo12g1980 283 SUPERFAMILY Barwin-like endoglucanases 75 181 IPR036908 -
Amo12g1980 283 Gene3D - 65 177 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1980 Amo-Chr12 93955884 93959549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1980 49 282 Expansin Gene Family AT4G17030 44.531 5.88e-66 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1980 - - adu:107485050 523.472