Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1973 ATGAAGAGTGAAGTGGAAGTTAATGATGCAGGTTTCGGAACCATGGATGATGCTAACAACAACACTAATAAGAACATAGAAGAAGATCTGAGTGAAGTGAATTACGAGTGGCTTCATGAAGATCCAAACTTGTTCTACGACGATTTTCCTCCTCTCCCTGATTTTCCATGCATCTCATCACCACCATCATCGTCATCATCATCATCATCTTTTTCATCATCAAAGCCAGCAGAGAAACCCATCACTGCATGTTCTTCATCTTCCTCTGCTTCTTCATCATCATCATCGTCATGTGCGGCTCTCAAAAAAGACATGCAGAAACCCAACAACACAAACATTACTGAAACAAAAGTACCTTTGCGTTCCACTGCTTCCATGGAGATCTCACAAACCGCCATGGATAGTAATCCACTGTTCCCAAATAACGTTGTTGGTGGTTGCATGGATATGATGGATATGGAAATGGAGCCTTTTGGGTTCATAGACTTCTTAGAAGAGCAAAACAACGCTGATTTCTTTGACCCCGACTCCATTTTCCATCACAACTTTCTCCAAACTGAAAATGAAAGTGAAATCCCATCATTACAACAAAACCAATTCACACAACAACCACCACCAGCACCAGAGGCAGAGGAAGAAGGTGTTACCAACAACAACAGAGAGGAGGGTGAAATGGTAATTCATCACGAGGATGACGGAAACGATGAAATGAGCAATGTGTTCTTGGAATGGCTAAAGACCAACAAGGACAAAATCTCAGCGAGTGATTTGAGAAGTGTGAAGCTGAAGAAATCAACGATCGAATCCGCGGCGAAGCGATTGGGCGGAGGAAAACAAGGGATGAAGCGTTTGCTAAAGCTTATTCTTGAATGGGTTCAAACCAACCACCTCAAGAACAAGAACCCAATTGAATCTTCCTCAAACCCTAATAATTTCTTCAATAAACCTCAATTACCACCACCACCACCACCATGCATTTATGCCTCTCATAATCCTGCTTTAATGGTGCAGTATCCTCCACAACCTGCTTATGTTACTGATGCTGGTGCTGATTATAGCAATAATAAGAATTCATGGCCTAATTCTCAGTTAAATAGTGTTACTACCCATTACAACCTTCCATTTGGGGACAATCATCTTCTCCCTGCGGTTCTTTATGGAAATCAGTACCCTTATCAGTTGTTTTATGGAAATGGAAATGGTGGTGGTGGTGGTGGTGGTGATCATGGATGGCGAAGATTAGGTCCTTTGGCTACCAAAGAAGCTAGGAAGAAGAGGATGGCGAGGCAGAGAAAGTGTTCATCAAATCAGAGGCAGAACAATCACTGGGGCCAGCCACAGAATCAGAGCCAAATTGCTGATACGGTAATCGGAGCCGAAAATTGGGTGTGTTGGCAGGGTGTGGCCGGGGCAGCTGCTTCTGCTCCTGCTCCTGCGCTTCCAGCCGAACCACAACCAGCTTCTTTAGGCCAGAATCATGGTCATCAAGGTCGTGGATCGTCGGATAAACGATCACAGGGGTGGAAGTCATCAGAGAAGAACTTGAAATTTCTTCTCCAAAAGGTTTTGAAGCAAAGTGATGTTGGTAGCTTGGGAAGGATAGTCTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCAGAATTGGATGCAAGAGATGGAATTTCTATTGACATGGAAGACATTGGAACTTCTCAAGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATCTGCTTGAGAACACTGGAGATTTCGTGAAAGCCAATGGACTCCAAGAAGGAGACTTCATAGTGATATATTCAGATTTGAAATGTGGCAAATTTATGATAAGAGGCGTGAAAGTGAGGCAAGCAGGTGGGACGAAATCGGAGACCAAAAAGGCAGCAGGAAAATCACAGAAAAACCAACATACAGTTGTTAATGGTCCAAACAACAATGCTACTTCGTCTTCACGTGATCAGCCGAAAATGAAAATTTAA 1995 0.4301 MKSEVEVNDAGFGTMDDANNNTNKNIEEDLSEVNYEWLHEDPNLFYDDFPPLPDFPCISSPPSSSSSSSSFSSSKPAEKPITACSSSSSASSSSSSSCAALKKDMQKPNNTNITETKVPLRSTASMEISQTAMDSNPLFPNNVVGGCMDMMDMEMEPFGFIDFLEEQNNADFFDPDSIFHHNFLQTENESEIPSLQQNQFTQQPPPAPEAEEEGVTNNNREEGEMVIHHEDDGNDEMSNVFLEWLKTNKDKISASDLRSVKLKKSTIESAAKRLGGGKQGMKRLLKLILEWVQTNHLKNKNPIESSSNPNNFFNKPQLPPPPPPCIYASHNPALMVQYPPQPAYVTDAGADYSNNKNSWPNSQLNSVTTHYNLPFGDNHLLPAVLYGNQYPYQLFYGNGNGGGGGGGDHGWRRLGPLATKEARKKRMARQRKCSSNQRQNNHWGQPQNQSQIADTVIGAENWVCWQGVAGAAASAPAPALPAEPQPASLGQNHGHQGRGSSDKRSQGWKSSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIDMEDIGTSQVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDLKCGKFMIRGVKVRQAGGTKSETKKAAGKSQKNQHTVVNGPNNNATSSSRDQPKMKI* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1973 664 Pfam B3 DNA binding domain 520 615 IPR003340 GO:0003677
Amo12g1973 664 MobiDBLite consensus disorder prediction 56 121 - -
Amo12g1973 664 SMART B3_2 519 619 IPR003340 GO:0003677
Amo12g1973 664 MobiDBLite consensus disorder prediction 59 121 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 637 664 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 433 449 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 190 218 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 624 664 - -
Amo12g1973 664 SUPERFAMILY DNA-binding pseudobarrel domain 518 614 IPR015300 -
Amo12g1973 664 CDD BfiI_C_EcoRII_N_B3 517 618 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 476 507 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 422 449 - -
Amo12g1973 664 Gene3D - 515 634 IPR015300 -
Amo12g1973 664 ProSiteProfiles B3 DNA-binding domain profile. 519 621 IPR003340 GO:0003677
Amo12g1973 664 MobiDBLite consensus disorder prediction 190 205 - -
Amo12g1973 664 MobiDBLite consensus disorder prediction 1 27 - -
Amo12g1973 664 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 656 - -
Amo12g1973 664 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 656 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1973 Amo-Chr12 93681316 93685253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1973 19 656 B3 DNA Binding Superfamily AT3G24650 41.831 1.29e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo12g1973 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1973 - - aip:107625556 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1973 12 93681316 93685253 Amo12g1973 12 93681316 93685253 ECH