Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1969 ATGGCTCAAAAACGGTTCCTCCAAAACTCCTTCACCACTCTCAGACTGGAACCTTCTAGACCCTACACCATGCAACTGGTCCTGCGTCAAATGCTCCGTAGACAACCACGTCATAGAGATAAACATTCAAGCTATACAGTTAGCCCTTCCTTTTCCTTCAAACCTCTCTTCTTCCCTTCCCTTCTTCGAAAACTCGTCATCTCCGGTGCCAATCTCACCGGACCTATCTCCCCGGATATCGGATACTTCGCTTCGCTTTCTGTTCTTGATCTCAGCTCAAATGCTCTTGTTGGTTCCATTCCTTCGACCATTGGAAACCTCAAGAACCTTCAAAACTTAACCTTAAACTCAAACCAGCTCACAGGTCCAATCCCAAAGGAGATTGGTGACTGTGTTAGCCTGAAGAATCTCAATGTTTTCGATAATAGCCTCAGCGGCGAGCTTCCAGTTGAGCTTGGAAGCCTTTTGAATCTTGAAAAGATAAGAGCTGGAGGGAACAAGGACATTGTTGGGAAGATTCCTGAAGCTATTGGTAACTGCAATAATCTAACCGTTTTAGGCCTTGCAGATACCAAGGTTTCGGGTTCGTTACCTTCTTCGTTGGGAAAACTATCCATGCTTCAAACTATCTCAATTTATAGTACTATGCTTTCCGGTGAGATTCCAGCTGAGATTGGAAACTGTTCTGAGCTTGTGAACTTGTTTCTTTATGAGAACGATCTCTCCGGTTCCATTCCGAAGGAGTTAGGGAAGCTCCAGAAGCTTGAAAAGATGCTGCTATGGCAGAACAGTTTCTTAGGCAGCATACCCGAAGAAATTGGAAGCTGCATAAGCTTGAAGATTCTTGATGTCTCCTTGAACTCTCTGTCAGGAACAATACCGCGAAGTTTGGGGAATCTTTCGAACCTCGAAGAGCTTATGCTGAGTAACAACAACATTTCAGGCTCAATTCCTGAAGTCCTTTCAAACTTGACGAACCTTGTTCAGTTGCAGTTAGATACAAATGAGATTTCCGGTTCAATTCCACCGGAGATCGGAAAACTAGAGATGCTTGAAGTTTTTTTTGCATGGCAGAACAAGCTCGAAGGAGCGATTCCTTTGGCGTTAGGCGGTTGTAGAAGCCTTCAAGCTTTGGATTTATCATACAATTCACTCACTGGTGGATTACCTCCAAGTTTGTTTCAGCTTCAGAACTTAACAAAGCTTCTCCTTATCTCGAACCAAATCTCCGGCCAAATTCCAGCAGAGATTGGTAACTGCAGCTCCCTTGTTCGCCTCCGGCTCGTTAAAAACAGAATCACAGGCCAGCTTCCAAGTGAAATTGGATTCCTTAACAACCTCAGCTTCCTTGATCTCTCTGAAAATCATCTTACAGGGTTAGTACCAGAGAATATCGGTAACTGCAAGGAACTTCAAATGCTCAACCTTAGCAATAACTCGCTTTCCGGCGCTTTGCCGAGTTCTTTATCCTCTCTTACAAGGATTGAAGTCATGGATGTCTCGATGAACAATTTCTCCGGCGAGTTTTTGATGAACATTGGCGAACTGGCTTCTCTGCTTAGAATCATTGTTAGGCAAAATTCGTTCTCCGGATCGATTCCCTCTTCGATTGGACGGTGTTCTGGTCTTCAGCTTTTAGACCTTAGCAGCAATAAATTCTCAGGAAGCATACCAGAAGAACTATTCGAAATCGAAGCGCTAGACATTGCTCTTAACTTGAGTCACAATGCATTGTCTGGAATAGTTCCGCCTCAGATTTCGGCTTTGAATAAGTTGTCTATTTTGGACATTTCGCATAATTTGCTTGAAGGAGACTTGTTAGCATTTGCAGGGCTTCAAAATCTTGTTTCTATGAATATCTCATACAATAAATTCTCCGGTTATTTACCGGACAGCAAGCTATTCCGCCAGTTATTGCCGACGGATTTCGAAGGGAATCAAGGCTTGTGTCCCAACGGCCATGATTCTTGCTTCATCAGTAATGCTGCAATGACAACAATGCTGCATAGTACTAATTCCAAGAGGTCACAGAGAATCAAACTCGCAATCGGACTTCTAAGCGCTTTGATTGTTGCATTGGCAATATTTGGAATCGCGACAATCATTCGAGCGAGGAAAGTTGCTCAAGATGGCAATGATTCTGAGATTGGAGGAAACTCGTTGCCGTGGCACTTTACGCCGTTCCAAAAGCTCAATTTCTCGGTTGATCAAGTCTTGAAGTGTTTGGTAGAGTCCAACATAATTGGAAAGGGATGTTCAGGAGTTGTTTACAAAGCCGAAATGGAAAACGGCGATGTCATCGCTGTGAAGAAGCTCTGGCCAACGACAATGGCTTCAAGATATGACTGCCAAAGTGACAAGCCGGCGAGTAACTGTGGAGTTCGCGATTCCTTCTCGGCCGAGGTGAAGACACTCGGCTCGATTCGCCACAAGAACATAGTGAGGTTCTTGGGCTGCAGCTGGAACAGAAACACAAGATTGCTCATGTATGACTATATGCCTAATGGGAGTCTTGGAAATCTACTCCATGAAAGAAGTAACTGCCTGGAATGGGATATCAGATACCGGATTATACTTGGCGCGGCGCAGGGCTTGGCTTACTTGCATCATGATTGTGTTCCTCCCATTGTTCATAGGGACATCAAGGCCAATAATATCCTCATAGGCCCTGAATTTGAACCATATATAGCTGATTTTGGACTCGCCAAGCTTGTGGATGATGGCGATTTCGCACGATCTTCTAGTACATTGGCTGGTTCCTATGGCTACATTGCTCCTGAGTATGGCTACATGATGAAAATAACAGAGAAAAGTGATGTCTACAGCTATGGTGTTGTTGTACTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGAAGGAGTCCACATTGTTGATTGGGTGAGACAAAAGAGAGGCGGAAAGGAAGTCCTCGACGAGAGCCTTCGTGTCCGGCCGGAATCCGAACTTGAGGAGATTCTGCAGACATTAGGTGTGGCTTTCTTGTGTGTTAATCCAAGCCCTGATGACAGGCCAACCATGAAAGATGTAGCAGCAATGCTTAAAGAAATTAGGCAAGAAAGAGGAGAGTATATGAAAGTTGACATGATTCTGAATGGATCTTCAGCAAATGATCAACAAGGAAGCAGTAATCATTCACACACATACCCAATTAGTAGCAGCAGCAACAAAAATTTTTCTGCATCTATGTTTATTTCTCCATCATCATCCAATAGTAAAGTTACTTTCAAATAG 3264 0.4381 MAQKRFLQNSFTTLRLEPSRPYTMQLVLRQMLRRQPRHRDKHSSYTVSPSFSFKPLFFPSLLRKLVISGANLTGPISPDIGYFASLSVLDLSSNALVGSIPSTIGNLKNLQNLTLNSNQLTGPIPKEIGDCVSLKNLNVFDNSLSGELPVELGSLLNLEKIRAGGNKDIVGKIPEAIGNCNNLTVLGLADTKVSGSLPSSLGKLSMLQTISIYSTMLSGEIPAEIGNCSELVNLFLYENDLSGSIPKELGKLQKLEKMLLWQNSFLGSIPEEIGSCISLKILDVSLNSLSGTIPRSLGNLSNLEELMLSNNNISGSIPEVLSNLTNLVQLQLDTNEISGSIPPEIGKLEMLEVFFAWQNKLEGAIPLALGGCRSLQALDLSYNSLTGGLPPSLFQLQNLTKLLLISNQISGQIPAEIGNCSSLVRLRLVKNRITGQLPSEIGFLNNLSFLDLSENHLTGLVPENIGNCKELQMLNLSNNSLSGALPSSLSSLTRIEVMDVSMNNFSGEFLMNIGELASLLRIIVRQNSFSGSIPSSIGRCSGLQLLDLSSNKFSGSIPEELFEIEALDIALNLSHNALSGIVPPQISALNKLSILDISHNLLEGDLLAFAGLQNLVSMNISYNKFSGYLPDSKLFRQLLPTDFEGNQGLCPNGHDSCFISNAAMTTMLHSTNSKRSQRIKLAIGLLSALIVALAIFGIATIIRARKVAQDGNDSEIGGNSLPWHFTPFQKLNFSVDQVLKCLVESNIIGKGCSGVVYKAEMENGDVIAVKKLWPTTMASRYDCQSDKPASNCGVRDSFSAEVKTLGSIRHKNIVRFLGCSWNRNTRLLMYDYMPNGSLGNLLHERSNCLEWDIRYRIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPEGVHIVDWVRQKRGGKEVLDESLRVRPESELEEILQTLGVAFLCVNPSPDDRPTMKDVAAMLKEIRQERGEYMKVDMILNGSSANDQQGSSNHSHTYPISSSSNKNFSASMFISPSSSNSKVTFK* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 389 486 IPR032675 -
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 570 657 IPR032675 -
Amo12g1969 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 51 1047 - -
Amo12g1969 1087 PRINTS Leucine-rich repeat signature 589 602 - -
Amo12g1969 1087 PRINTS Leucine-rich repeat signature 447 460 - -
Amo12g1969 1087 SMART serkin_6 742 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1969 1087 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Amo12g1969 1087 Pfam Leucine rich repeat 85 144 IPR001611 GO:0005515
Amo12g1969 1087 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Amo12g1969 1087 SUPERFAMILY L domain-like 52 289 - -
Amo12g1969 1087 SUPERFAMILY RNI-like 261 620 - -
Amo12g1969 1087 ProSiteProfiles Protein kinase domain profile. 742 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 41 183 IPR032675 -
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 487 569 IPR032675 -
Amo12g1969 1087 MobiDBLite consensus disorder prediction 1043 1087 - -
Amo12g1969 1087 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 51 1047 - -
Amo12g1969 1087 Pfam Leucine Rich Repeat 374 393 IPR001611 GO:0005515
Amo12g1969 1087 SUPERFAMILY Protein kinase-like (PK-like) 732 1024 IPR011009 -
Amo12g1969 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672|GO:0006468
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 292 388 IPR032675 -
Amo12g1969 1087 Gene3D Ribonuclease Inhibitor 184 291 IPR032675 -
Amo12g1969 1087 Pfam Protein kinase domain 744 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1969 1087 Gene3D Transferase(Phosphotransferase) domain 1 833 1046 - -
Amo12g1969 1087 ProSitePatterns Protein kinases ATP-binding region signature. 748 771 IPR017441 GO:0005524
Amo12g1969 1087 SMART LRR_typ_2 107 131 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 252 276 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 396 420 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 83 106 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 444 468 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 324 348 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 612 637 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 300 323 IPR003591 -
Amo12g1969 1087 SMART LRR_typ_2 540 564 IPR003591 -
Amo12g1969 1087 Gene3D Phosphorylase Kinase; domain 1 727 832 - -
Amo12g1969 1087 ProSiteProfiles Leucine-rich repeat profile. 302 325 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1969 Amo-Chr12 93641132 93645469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1969 168 630 Receptor kinase-like Gene Family AT5G56040 36.531 2.18e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo12g1969 Pkinase 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1969 - - gmx:100794698 1567.36