Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1968 ATGTCCACCACTTCTGGTCTCGTCATTCCCTGCAAAGCTGCTGTTGCATGGGAAGCAGGGAAACCACTGGTGATAGAAAAAGTGGAGGTGGCTCCGCCACAGGCCATGGAAGTGAGGATCAAGGTTAAATATACCTCACTCTGCCATACTGATCTCTACTTCTGGGAGGCCAAGGGACAAACTCCACTGTTTCCCCGAATTTTCGGCCACGAGGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCACAGACTTGCATGTTGGGGATCATGTGCTTCCAGTATTCACCGGTGAATGTGGTGAATGCGCTCATTGCAAATCCGAGGAAAGCAACATGTGTGACCTCCTGAGAATAGATACAGAGAGAGGAGTCATGCATAGTGATGGTAAAAGCAGGTTTTCCATTAATGGTACGCCAATAAACCACTTTGTTGGCACGTCCACATTTAGTGAATACACTGTGATACATTCTGGATGCTTGGCAAAGCTCAATCCACTGGCACCAATGGATAAAGTATGTGTCCTCAGTTGTGGTATCTCAACAGGATTGGGAGCAACTTTGAATGTAGCAAAACCAAAGAAGGGTTCTACAGTGGCAGTGTTTGGTCTTGGAGCTGTTGGACTTGCTGCTGCTGAGGGTGCCCGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAACCCAAACAGGTTTGAAGAAGCAAAAAAATTTGGAATAACCGATTTTGTGAATCCACAGGACTATGATAGGCCAGTTCAACAGGTGATTGCGGAAATGACCAATGGAGGAGTTGATCGAAGTATAGAGTGCACTGGAAACATTAACGCAATGATATCTGCTTTTGAATGTGTTCATGACGGATGGGGTGTTGCTGTGCTTGTTGGAGTTCCAACTAAGGATGCAGTTTTCATGACCAAGCCCATTAATTTGCTCAACGAAAGAACACTAAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACCGATCTTCCATCTGTGGTCGATATGTATATGAACAAGAAATTGGAATTGGACAAGTTTATAACCCACAGAGTTCCTTTCTCTGAAATCAACAAGGCATTTGATCTAATGTTGAGAGGGGAGGGACTAAGGTGTATCATTAGTATGGAAGACTAA 1143 0.4444 MSTTSGLVIPCKAAVAWEAGKPLVIEKVEVAPPQAMEVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLHVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTERGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVIHSGCLAKLNPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPNRFEEAKKFGITDFVNPQDYDRPVQQVIAEMTNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPTKDAVFMTKPINLLNERTLKGTFFGNYKPRTDLPSVVDMYMNKKLELDKFITHRVPFSEINKAFDLMLRGEGLRCIISMED* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1968 380 CDD alcohol_DH_plants 9 376 - -
Amo12g1968 380 PANTHER ALCOHOL DEHYDROGENASE 1-LIKE 4 378 - -
Amo12g1968 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Amo12g1968 380 Gene3D - 183 321 - -
Amo12g1968 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Amo12g1968 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Amo12g1968 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Amo12g1968 380 Pfam Alcohol dehydrogenase GroES-like domain 37 161 IPR013154 -
Amo12g1968 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Amo12g1968 380 Gene3D - 19 370 - -
Amo12g1968 380 SUPERFAMILY GroES-like 328 376 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1968 Amo-Chr12 93623431 93628100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1968 37 380 Monolignol Biosynthesis Gene Families AT1G72680 22.571 6.93e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1968 K18857 - egr:104426870 687.952