Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo12g1966 | ATGGAAACGCACAAAGCCAAACTACGCTGCCAATGGTTACAATGCAGACCACGTTCTTCATCCAGCGGCAAGAACAAACTGAAAGAACCTCTCGTGGATTCTGATGATTCTTCCAATGAGGTGCCGTTCTCAAGCAAGAGGAAGGCAGCAACCGCTTTTGGTTACTGTCACGGAATGAGAGAAGGGGCTAACGAGGAGGAGAAGAGGATGATGAATATCAAGAAAACAAAAATAGACTGTTTTATTCAAAATAAACAGTTTGATTTCAATGATGATGAACTTGAAGTTGTTGATATTCTCTTTAACCTCCCCGGGAACTTCTTAGAGAGAGTTAATTTAAAGACTTCAAGCAGTGCTGCGAATTCAACTGCCAGTGCTGACCAAGAACAGGTTTCAAAGGAGGATTCCAAGATGACCGTTAGCTCAATGGATTCTCATTCCAAGAAAGAAACAAAGAAACCAGTCAACACAGAAAGAAACAGCCCCAGTGCCGTGAATTCAGGTCCCAGTGCCTATCAAGAACGGGTTTCAAACAAGAATTCCAAGAAGGTCATTAGCTCAGTGGATTCTCGGTCCAAGAAAGAATCAAAGAAACCAATTAACCAAGAACCCTCTGAATTGCCACAAAATTTCAAGAACCTGATCAGTGATATGGGTGGCAGCAGGATCACTCTGCTTATCCAGAAAACTCTCTATCAATCGGATTTGGATCCGCAACAAAATCGGCTTTCGATTCCGTCACAGCAGGTCAAGGACAAAGATTTCTTGCTTCCTACGGAACTAGAAAGTTTGGAGGAGAAAAACGGAATAAAAGTGAAATTGATCCAACCTTCCCTGGAAATCACCGAGTTGACTTTGATTAAGTGGTTCATGCACAAGGGCCCAGGGTCAAAGAAAGTAAGCATTTCCTATATTTTGAGATCAAATTGGGTCAAAGTTGCAAAGGCTAACAATCTAGAAAAGAATGATGTTGTTCAAGTTTGGTCATTCCGAGTTGACGAGAAATTATGCATGGCAATTGTCAAGCTTTGA | 1032 | 0.4176 | METHKAKLRCQWLQCRPRSSSSGKNKLKEPLVDSDDSSNEVPFSSKRKAATAFGYCHGMREGANEEEKRMMNIKKTKIDCFIQNKQFDFNDDELEVVDILFNLPGNFLERVNLKTSSSAANSTASADQEQVSKEDSKMTVSSMDSHSKKETKKPVNTERNSPSAVNSGPSAYQERVSNKNSKKVISSVDSRSKKESKKPINQEPSELPQNFKNLISDMGGSRITLLIQKTLYQSDLDPQQNRLSIPSQQVKDKDFLLPTELESLEEKNGIKVKLIQPSLEITELTLIKWFMHKGPGSKKVSISYILRSNWVKVAKANNLEKNDVVQVWSFRVDEKLCMAIVKL* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo12g1966 | 343 | PANTHER | DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED | 68 | 343 | - | - | |
| Amo12g1966 | 343 | MobiDBLite | consensus disorder prediction | 116 | 213 | - | - | |
| Amo12g1966 | 343 | SUPERFAMILY | DNA-binding pseudobarrel domain | 225 | 339 | IPR015300 | - | |
| Amo12g1966 | 343 | MobiDBLite | consensus disorder prediction | 130 | 156 | - | - | |
| Amo12g1966 | 343 | Pfam | B3 domain-containing protein At2g31720-like | 212 | 315 | IPR005508 | GO:0003677 | |
| Amo12g1966 | 343 | MobiDBLite | consensus disorder prediction | 186 | 201 | - | - | |
| Amo12g1966 | 343 | MobiDBLite | consensus disorder prediction | 157 | 185 | - | - | |
| Amo12g1966 | 343 | MobiDBLite | consensus disorder prediction | 17 | 43 | - | - | |
| Amo12g1966 | 343 | PANTHER | B3 DOMAIN PLANT PROTEIN-RELATED | 68 | 343 | IPR005508 | GO:0003677 | |
| Amo12g1966 | 343 | CDD | B3_DNA | 226 | 342 | IPR003340 | GO:0003677 | |
| Amo12g1966 | 343 | Gene3D | - | 223 | 343 | IPR015300 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo12g1966 | Amo-Chr12 | 93597445 | 93598476 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo12g1966 | 206 | 340 | B3 DNA Binding Superfamily | AT1G05930 | 27.465 | 3.25e-10 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo12g1966 | - | - | aip:110269262 | 664.455 |