Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1962 ATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCTTCTTCTTCTTCTTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTGTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGRCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTWCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 702 0.463 MERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKASIATEAAEPVSSVSDTSPEEDLAMCLIMLSRDKWRKTSVEEEEEMKLKNKKVLRGKHHHHHHRLQCDKCGKTFRSSGALGSHRSIXLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPXSIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1962 233 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Amo12g1962 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Amo12g1962 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Amo12g1962 233 MobiDBLite consensus disorder prediction 25 84 - -
Amo12g1962 233 Pfam C2H2-type zinc finger 166 188 - -
Amo12g1962 233 Pfam C2H2-type zinc finger 3 28 - -
Amo12g1962 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Amo12g1962 233 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 72 233 IPR044303 GO:0006355
Amo12g1962 233 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 69 IPR044303 GO:0006355
Amo12g1962 233 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 72 233 - -
Amo12g1962 233 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 69 - -
Amo12g1962 233 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Amo12g1962 233 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Amo12g1962 233 Gene3D Classic Zinc Finger 131 188 - -
Amo12g1962 233 SMART c2h2final6 4 26 IPR013087 -
Amo12g1962 233 SMART c2h2final6 132 152 IPR013087 -
Amo12g1962 233 SMART c2h2final6 166 188 IPR013087 -
Amo12g1962 233 SUPERFAMILY beta-beta-alpha zinc fingers 133 188 IPR036236 -
Amo12g1962 233 Pfam Zinc finger, C2H2 type 133 152 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1962 Amo-Chr12 93500194 93501123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1962 1 230 C2H2 Transcription Factor Family AT3G60580 32.534 1.77e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g1962 zf-C2H2_6 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1962 - - adu:107488121 383.259