Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1961 ATGGCTTGTCTCTCGCTGCAACTGCTGCTTTTGTGTTTCACCACTCTCACAATTCATGCGACAAAGGTGACATGTGCAGAACCCTACCATCACCGTAGCACCCTTAGAACATTGTCTTCTTCTTCTTCTACCAAGTCCTCCTCCAATCATCGTCGGAACCACACTTGGGTGGGACCAACAGGTCAGCGCGTAATCACCGTTGACGTCAACGGCGGTGGACAGTTCCGGTCGGTGCAAGCTGCGGTGAATGCCGTTCCAGACAACAATAGAATGAACGTACTGATCCAAATCAGCCCGGGATCCTACATAGAGAAGGTTGTTGTGCCCGTGACGAAGCCGTACATAACGTTTGAGGGAGCGGGAAAAGAAGTGACGGTGATAGAATGGCATGATAGGGCCAGCGACCCTGGTCCCAACGGACAGCAACTGCGTACTTACAGAACTGCTTCTGTCACTGTTTTCGCCAACTATTTCTCTGCTCGCAATATCAGCTTCAAGAACACAGCGCCAGCACCAATGCCGGGGATGCATGGCTGGCAAGCGGCGGCGTTTCGAATATCCGGTGACAAAGCATACTTCTCAGGCTGTGGATTCRACGGAGCACAAGACACTCTTTGCGACGACGCTGGCAGGCATTACTTCAAGGACTGCTATATCGAGGGTTCAATTGATTTCATATTTGGGAATGGCAGATCCATGTACAAGGATTGCCAGCTACACTCAATAGCAACGAGATTTGGTTCCATAGCAGCCCATGATAGGAAAGAGGCAGAGGAGAAGACGGGCTTTGCATTCGTGAGATGCAGGGTGACGGGCACAGGCCCGCTCTATGTGGGCAGAGCCATGGGCCAGTACTCCAGAATTGTCTACTCTTACACTTACTTCGATGACATTGTTGCTCATGGCGGCTGGGATGATTGGGACCATGCCAACAATAAGAACAAGACTGTGTTCTTTGGAGTGTACAAGTGTTGGGGGCCAGGAGCAGAGGCAGTACGTGGGGTATCATGGGCCAAAGAGTTAGATTTCGAATCTGCCCACCCATTTCTCGTCAAGAGCTTTGTCAATGGCAGACACTGGATTGCACCTTCTGATGCCTAG 1101 0.5104 MACLSLQLLLLCFTTLTIHATKVTCAEPYHHRSTLRTLSSSSSTKSSSNHRRNHTWVGPTGQRVITVDVNGGGQFRSVQAAVNAVPDNNRMNVLIQISPGSYIEKVVVPVTKPYITFEGAGKEVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMHGWQAAAFRISGDKAYFSGCGFXGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSMYKDCQLHSIATRFGSIAAHDRKEAEEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHANNKNKTVFFGVYKCWGPGAEAVRGVSWAKELDFESAHPFLVKSFVNGRHWIAPSDA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1961 366 Pfam Pectinesterase 65 357 IPR000070 GO:0030599|GO:0042545
Amo12g1961 366 MobiDBLite consensus disorder prediction 36 57 - -
Amo12g1961 366 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Amo12g1961 366 SUPERFAMILY Pectin lyase-like 61 363 IPR011050 -
Amo12g1961 366 Gene3D - 60 365 IPR012334 -
Amo12g1961 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 365 - -
Amo12g1961 366 PANTHER PECTINESTERASE 68-RELATED 31 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1961 Amo-Chr12 93492203 93495946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1961 32 366 Carbohydrate Esterase AT5G47500 75.821 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1961 - - cam:101501763 621.698