Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1958 ATGTCCGGGCGGCGGCAGAGAAGTTCCGGTCGCTCAGAGTTCACAGAGAATGAGATCAATGATCTTGCTTCAAGGTTACAAGCATTGCTCCCACAACCTAACCAACAAACAAGGAACTCAAGGCAGGTATCAGTGTTGGAGATCTTGAAGGAAACTTGCAGTCACATCAAGCGGCTACAGAAAGATGTGGAAGACCTTAGTGAAACGCTGACAGGGCTGTTGGATTCTCTTCACATTACTGATATTGACATCACTCTTTTACAAGATCTTTTGCAACAAAAATAA 285 0.4421 MSGRRQRSSGRSEFTENEINDLASRLQALLPQPNQQTRNSRQVSVLEILKETCSHIKRLQKDVEDLSETLTGLLDSLHITDIDITLLQDLLQQK* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1958 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 59 IPR011598 GO:0046983
Amo12g1958 94 PANTHER DNA BINDING PROTEIN 1 93 - -
Amo12g1958 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 76 IPR036638 GO:0046983
Amo12g1958 94 PANTHER DNA BINDING PROTEIN 1 93 IPR044172 -
Amo12g1958 94 Pfam Helix-loop-helix DNA-binding domain 18 60 IPR011598 GO:0046983
Amo12g1958 94 Gene3D - 4 71 IPR036638 GO:0046983
Amo12g1958 94 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1958 Amo-Chr12 93247764 93248637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1958 1 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 47.436 2.87e-14 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g1958 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1958 - - adu:110277334 127.872