Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1957 ATGGAGGTTTCTATGAAAGGCTTCACGCTCTGTCTTTTGCTCATGGCGCTGCTCTCAGCTTACTGCGCTACCTCAATTAACGAGGGCAATGTAGGAACGGGGAGCTTGCAGAGCTCGAAGAACTCGTCAATGGTGGAGAGGTCGGGTGACACTCTGATGAATGAGCACGCCGTTGATAATCCAGAGGAGATAGCTTCTATGGTTGATACGACCATTCGCAACCATACAGCAAGAAGGAATCTGAATTTCTTCTCATGTGGATCTGGCAACCCGATCGATGACTGCTGGCGCTGCGACAAGCGCTGGTTCGCCCACCGAAAGCGCTTGGCAGATTGTGGCATTGGTTTTGGCCGCAATGCCATTGGAGGCCGTGATGGAAGGTACTATGTTGTCACTGACCCTGGCGATGATGACCCTGTTAATCCCAAACCCGGCACTCTTCGCCACGCTGTTATCCAAGACAGGCCATTGTGGATAGTCTTCAAGAGGGACATGGTCATTACTTTGAAACAAGAGCTTCTCATGAATAGCTTCAAGACCATAGATGCTCGTGGTGTCAATGTTCACATTGCTTATGGTGCTTGCCTTACACTACAGTTCATCACCAATGTAATCATCCATGGCCTCCATATCCATGATTGCAAGCCAACTGGGAACGCCATGGTTCGCAGCTCGCCGAGTCATTATGGATGGAGGACCATGGCTGATGGCGATGGAATCTCAATTTTTGGTTCAAGTCACATTTGGATTGACCACAACTCGCTGTCCAATTGTGCTGATGGACTCATTGATGCCATCATGGGGTCAACTGCTATTACCATTTCTAACAACTACTTTACCCACCATAATGAGGTTATGCTACTAGGACACAGTGACTCCTATGTTCGGGACAAGCAGATGCAAGTAACGATTGCCTACAACCATTTTGGGGAGGGTCTAATCCAAAGAATGCCAAGGTGTAGACATGGATATTTCCACGTGGTAAACAATGACTATACTCACTGGGAGATGTATGCAATTGGCGGCAGTGCTGATCCCACAATTAACAGCCAGGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTGACAAAGAGGGTGGATACAGGGGAAACAATATGGAAAGGGTGGAATTGGAGGTCCGAGGGAGACCTTCTTCTGAATGGAGCATATTTCACTTCATCAGGAGCCGGAGCTGCGTCAAGCTATGCCAGAGCCTCGAGTCTTGCCGCCAAATCCTCTTCTTTGGTCGGAACCCTCACCTCTGGCGCCGGTGTTCTTAGCTGCCGCAGGGGCTACATGTGTTAA 1317 0.4928 MEVSMKGFTLCLLLMALLSAYCATSINEGNVGTGSLQSSKNSSMVERSGDTLMNEHAVDNPEEIASMVDTTIRNHTARRNLNFFSCGSGNPIDDCWRCDKRWFAHRKRLADCGIGFGRNAIGGRDGRYYVVTDPGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELLMNSFKTIDARGVNVHIAYGACLTLQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNPFAKEVTKRVDTGETIWKGWNWRSEGDLLLNGAYFTSSGAGAASSYARASSLAAKSSSLVGTLTSGAGVLSCRRGYMC* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1957 438 SMART amb_all 164 361 IPR002022 -
Amo12g1957 438 SUPERFAMILY Pectin lyase-like 67 432 IPR011050 -
Amo12g1957 438 Gene3D - 89 431 IPR012334 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Amo12g1957 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Amo12g1957 438 Pfam Pectate lyase 199 353 IPR002022 -
Amo12g1957 438 PANTHER PECTATE LYASE 37 435 - -
Amo12g1957 438 PANTHER PECTATE LYASE 18-RELATED 37 435 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1957 Amo-Chr12 93237024 93242811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1957 31 438 Polysaccharide Lyase AT4G13710 76.627 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1957 K01728 - gmx:100809277 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1957 12 93237024 93242811 Amo12g1957 12 93237024 93242811 ECH