Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1953 ATGCATCGCGATCGATTGGTTGGAGAGCAAAATGCTTTTGAGTTGGAAAATGGAATGATCCTCTTCTTATCTCTCTCTGTCTTATGCTCTCAGCCCCATACATATACCTCTTCAAAAGCAAAGAAACAGACCCAAATCTCTACACATATTGAAACACTTCTATTGTTTGAAAGCTTACATTTATTTATATTCCAACCATTCTTATTTTTTCTCCTCCAATTCATCTTGATTTGCTCTCATATTCCTCAGGACTCAGAGATGGGAGATAAGAAAAAACCAACAAAAGTTGGCGGAGAAAGCCCAAGAGAAGATGCAACAAGAAGGATTTTTCCATGCCTATTTTGCTCAAGAACATTTTACAGTTCCCAAGCTTTAGGAGGGCACCAAAATGCTCACAAAAAAGAGAGAACAGCTGCAAGGAGATCCCAAAAATATTCTCAACCTTCTCCAAATCCACCACCTATGGCTTTTGCACCAACACTACACCAACTTGGGGTTTTGAATAGTAACCCTTCAATGTTCATCACTGCCCATGCTGCTAATTTTCATTGTCTTCAAAACAATCAAATAAATGAACAGTTTGGATCAAATAATGGTGCACCTAGATTTGGAAACTATCCATTTCTTCAGGGAAGAAGAATTTCAAGCAATAGTAATGGGTTTTTTTATGATGATGGTGAGAAAGGGTATTGTGGTAAATGGCAAAGTAGCATAAGAAGCAGTAATAGTAATGTTGGCATTAGAAGAGAGAAGGAGCACAAACTTGATTTGTCTCTTCATCTGTAG 786 0.3779 MHRDRLVGEQNAFELENGMILFLSLSVLCSQPHTYTSSKAKKQTQISTHIETLLLFESLHLFIFQPFLFFLLQFILICSHIPQDSEMGDKKKPTKVGGESPREDATRRIFPCLFCSRTFYSSQALGGHQNAHKKERTAARRSQKYSQPSPNPPPMAFAPTLHQLGVLNSNPSMFITAHAANFHCLQNNQINEQFGSNNGAPRFGNYPFLQGRRISSNSNGFFYDDGEKGYCGKWQSSIRSSNSNVGIRREKEHKLDLSLHL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1953 261 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Amo12g1953 261 MobiDBLite consensus disorder prediction 126 157 - -
Amo12g1953 261 Gene3D Classic Zinc Finger 86 152 - -
Amo12g1953 261 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
Amo12g1953 261 PANTHER PROTEIN LATE FLOWERING 103 261 - -
Amo12g1953 261 PANTHER ZINC FINGER PROTEIN JAGGED 103 261 IPR045320 GO:0003700
Amo12g1953 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1953 Amo-Chr12 92962088 92963382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1953 105 158 C2H2 Transcription Factor Family AT1G80730 59.259 8.21e-15 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1953 12 92962088 92963382 Amo12g1953 12 92962088 92963382 ECH