Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1951 ATGATGCATAAGGCGGAGAACCTGTTAGTCAACAATCATGGGAGGGATCCTGGTTTCTCAAAGCCACACTTCCAGCCAGGATTTGCCACTGTTTCTAATAAATGTCAGGATCTACGTAGTAATATCAATAATAGGGCAGGGGAAGAATTTCCTGTGCAGTTTGTTAATGATGGAGTTGCTTCTAGAAGAATTCCTGTTCCTCGTGACATATCCCAAATGCGTGAAAATAGAGCGGCACAAAGTAGGGAAAATGGCGACGTCAAGTATGAGTGTCTTACTAATATTTTGGGGCTGAAGAAATTGGAATCTCAGAGGTCAGATGTAAGTGACCTTATATCTCTGAAAGAGCCAACTCATGAGATGGAGAATGGGGCTTCTGTCACTGTTGGTGAATTAATTGATGAGTGGGGTGATCATGGGACACGTGTGCCATCTGTTGTGCAGAATGGATCCATGCATTTGAATGGTCATGTTGGTTCAATTTTAGATGACTCTCGGAATGGGAGAATGAAGTTTCTGTGCAGCTTTGATGGAAAAATATTACCGAGGCCTAGTGATGGAAAACTCAGATATGTAGGGGGACAGACCCGCATGATATCCATTAAGAAGGATGTTTCGTGGGAAGAGCTTATGAAGAAGACTTTCGGTATTTGCAGCCAACCTCATACAATCAGATATCAACTTCCTGGGGAGGATCTCGATTCTCTGATATCTGTTTCGTCTGATGAGGATCTTCAACATATGATTGAGGAATACCAAGGGCTTGAAAGAAATGAAGGTTCACAAAGACTCAGAATATTTTTAATTCCCTTGGGTGAATCTGATGAGGCATGTTCATTCGTGGCAAGCACAATTCCACAGAGTGATCCTGATTACCAATATGTTGTTGCTGTGAATGGCATGCCAGGGCCTACTCTTAGAAATAGTGCTGGGCAGTGTTTGACAAATGAAGCAAGTCAATTGAATGCACCTGGTTTACAGAAAAATTCTCTCAATGCCTTTTATCCTGTGGAAGCCAGCAGTGGTATTCATGCTTTGAATGCAGATGGAAGTTTTAATGATTCTCTTAATATGCACAGATGCAACAATCAATCTCCACAAATTTCCTCTATTCGAATTAAGGGAGGAGGTTCAAGTATGGGTTATACACAGTTGCTTGGTAATAATTCATGCCAAGGTAGTATTGAGAGCAATGCATCGTTTATTACTGCTCAGCTGCAACCTGAGAACTCCCCCATAAACCCTGCTGATCGCAGATACCCCCAACAAGTAACTTTGAATCTCTTAAATGAAAGTCTCCCCTGTCAACGTGATGATGTTTGTCCACCAAAGAAGCACATTGGAGGTCAATTTAGCAACTGCAGTCCTCACAAGGAATCTGTGACCCCTTCATATCTGGAAAATTCAAACTTTCAACAGGCTGAATCTAGTGGTACTAACAATCCCCCTTTTGGGATGCTTCATTCATTTTCTGATCCACAGTTGCATGAGAGTTTAACAAGGTCTTGTTACTGCTCACAAGAAGGATCTGTCCTCTCTTTCTCCTTGAACCATGCAAAGGCTCAGCCATCTTCCATGTTACAGTCTAGTTTCTCACAAGGAAATCTTATTGAGCTCCAGCAAGATTCCAGTCTCCTTTATCCTCAATTACAAAGTAAGTTACCAAATAATATTGAGTCTTCTGAGTTGTATGGAAGGCAGGATTTGACATCATCTTCTCCATATTCAGAATCATCAGGAACGAATGGAATTCATAAAGATAGCATTTTAATTGGAAAAAAGTATCCTGTGCCTCAATCTGATGTAAACGGATCTAGCTTTATGGCGAAGCATGCTGAGAACAATTCTTTAACTTCAGAAAAAATCAATGTAATTGAAGGAAAGAATCCTTTTGATGTAACAAATGGCAACTTTTATGAAGGGAAATCACTTGCTGCTCATATGGGACACGTGACTGAATTGAATCTTCTGGATTCCTTCCCTGCTAATAAATTGAATGCCAAGATTAATATGCAAAAGGATTGGGAGCTAAGTTCTGAGGACATGAACCAAAGTACTATAGATAGTAAGAAATATGCTGTTGCTGAAGGTATGAATGGTGGACAAGGATCTGATTTTGCATTGACAAGAAACATCAAGATAAATGGTTCAGTGCCAACCTGTAGAGAAACCTCTTGCCACAAAAATTCTCTTGGTGATCTTACGTGTGAGCTGTCAACCGAACCTACTTCTTGTAAAGCTTCGCAAGTTCAACCTTCCATGAGTTGCCATGATGCCTGTTTTAATGAAATTTCAACTTTAAGCACTGCTTCTTTGTATCATGTACATCATAATGATCCCGGTCCTTGTTCAAATTCACCTACAAATGATCAGCACATTCCAAACAACACTTCTTTCCACAAAGTTCCTTCTTTTATTGATGACGACTTGATAACCAGTACTGACCAGATCTTTCCAGTTATTGGTGGGCACTTTGCTGGAAAGTCAAAACCTGGAGATGTCATGCCAGGACTATCAAAAAATTTAGGAAACTGTGATGATGTTAATCAAACAAAACCATTTGGGCTTGTAGAAGATGTGACTGGTGTCGTTCCTCGAGTCATTCATTCTACATTTGCATCCATCCCCCCAATTGTGGATGTAAACGGATGTATGCCTGTATCCTTGTCTTGTACAGAGGCAGATAGCATCATCGCAGACTCTGAACCTGAGGATTTTAAATACGATGAAGCTGACAAAAATGATTCCCTTTCTGACGCAATGATAGCTGAAATGGAAGCGAGCATCTATGGTCTGCAGATAATAAAGAATGCTGATCTTGAAGAACTTAAGGAGTTAGGATCTGGTACTTATGGAACTGTTTATCATGGAAAATGGCGGGGAAGTGATGTTGCTATAAAGAGGATTAAGAAGAGCTGTTTTGGAGGGAAACCTTCTGAACGAGAACGATTGACTAAAGATTTTTGGAGAGAGGCACAAATCCTTTCAAATCTTCACCATCCCAATGTTGTTGCATTTTATGGAATAGTACCAGATGCAGCTGGGGGAACATTGGCAACTGTAACCGAATATATGGTTAATGGTTCCCTACGGCATGTCCTCATCAGGAAAGATAGATTACTAGATAACCGTAAAAGGCTAATAATTGCCATGGATGCGGCTTTTGGTATGGAATATTTGCACTCCAAAAACATTGTTCACTTTGATTTGAAGTGTGACAATTTGCTTGTCAATCTAAGGGATCCAGAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAGCGGAACACCCTGATATCTGGTGGTGTGCGAGGAACCCTTCCTTGGATGGCACCAGAGCTGTTGAATGGCAGCAGCAACAGGGTTTCTGAAAAGGTTGATGTCTTCTCATTCGGCATTTCAATGTGGGAGCTCTTGACTGGTGAGGAACCTTATGCAGATATGCATTATGGTGCCATTATTGGGGGGATTGTAAAGAACACTCTTAGACCGCCTATTCCAGAACATTGTGATCCTGAATGGAAGAAACTCATGGAAGATTGTTGGTCGCGTGATCCTGAAAGTCGCCCATCGTTCACCGAGATAACTAACCGGTTACGATCTATGTATAAGGCGCTTCAAGCAAAAGGGGTTGTCAGGCACGACAGATAA 3663 0.4106 MMHKAENLLVNNHGRDPGFSKPHFQPGFATVSNKCQDLRSNINNRAGEEFPVQFVNDGVASRRIPVPRDISQMRENRAAQSRENGDVKYECLTNILGLKKLESQRSDVSDLISLKEPTHEMENGASVTVGELIDEWGDHGTRVPSVVQNGSMHLNGHVGSILDDSRNGRMKFLCSFDGKILPRPSDGKLRYVGGQTRMISIKKDVSWEELMKKTFGICSQPHTIRYQLPGEDLDSLISVSSDEDLQHMIEEYQGLERNEGSQRLRIFLIPLGESDEACSFVASTIPQSDPDYQYVVAVNGMPGPTLRNSAGQCLTNEASQLNAPGLQKNSLNAFYPVEASSGIHALNADGSFNDSLNMHRCNNQSPQISSIRIKGGGSSMGYTQLLGNNSCQGSIESNASFITAQLQPENSPINPADRRYPQQVTLNLLNESLPCQRDDVCPPKKHIGGQFSNCSPHKESVTPSYLENSNFQQAESSGTNNPPFGMLHSFSDPQLHESLTRSCYCSQEGSVLSFSLNHAKAQPSSMLQSSFSQGNLIELQQDSSLLYPQLQSKLPNNIESSELYGRQDLTSSSPYSESSGTNGIHKDSILIGKKYPVPQSDVNGSSFMAKHAENNSLTSEKINVIEGKNPFDVTNGNFYEGKSLAAHMGHVTELNLLDSFPANKLNAKINMQKDWELSSEDMNQSTIDSKKYAVAEGMNGGQGSDFALTRNIKINGSVPTCRETSCHKNSLGDLTCELSTEPTSCKASQVQPSMSCHDACFNEISTLSTASLYHVHHNDPGPCSNSPTNDQHIPNNTSFHKVPSFIDDDLITSTDQIFPVIGGHFAGKSKPGDVMPGLSKNLGNCDDVNQTKPFGLVEDVTGVVPRVIHSTFASIPPIVDVNGCMPVSLSCTEADSIIADSEPEDFKYDEADKNDSLSDAMIAEMEASIYGLQIIKNADLEELKELGSGTYGTVYHGKWRGSDVAIKRIKKSCFGGKPSERERLTKDFWREAQILSNLHHPNVVAFYGIVPDAAGGTLATVTEYMVNGSLRHVLIRKDRLLDNRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLISGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGISMWELLTGEEPYADMHYGAIIGGIVKNTLRPPIPEHCDPEWKKLMEDCWSRDPESRPSFTEITNRLRSMYKALQAKGVVRHDR* 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1951 1220 CDD PB1_UP2 173 269 - -
Amo12g1951 1220 SMART PB1_new 184 271 IPR000270 GO:0005515
Amo12g1951 1220 ProSiteProfiles Protein kinase domain profile. 940 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1951 1220 Pfam PB1 domain 186 268 IPR000270 GO:0005515
Amo12g1951 1220 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 128 1215 - -
Amo12g1951 1220 SUPERFAMILY Protein kinase-like (PK-like) 927 1202 IPR011009 -
Amo12g1951 1220 SUPERFAMILY CAD & PB1 domains 185 271 - -
Amo12g1951 1220 CDD STKc_MAP3K-like 946 1203 - -
Amo12g1951 1220 PANTHER SERINE-THREONINE PROTEIN KINASE 128 1215 - -
Amo12g1951 1220 ProSitePatterns Protein kinases ATP-binding region signature. 946 971 IPR017441 GO:0005524
Amo12g1951 1220 PRINTS Tyrosine kinase catalytic domain signature 1130 1152 IPR001245 GO:0004672|GO:0006468
Amo12g1951 1220 PRINTS Tyrosine kinase catalytic domain signature 1174 1196 IPR001245 GO:0004672|GO:0006468
Amo12g1951 1220 PRINTS Tyrosine kinase catalytic domain signature 1059 1077 IPR001245 GO:0004672|GO:0006468
Amo12g1951 1220 PRINTS Tyrosine kinase catalytic domain signature 1022 1035 IPR001245 GO:0004672|GO:0006468
Amo12g1951 1220 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1065 1077 IPR008271 GO:0004672|GO:0006468
Amo12g1951 1220 Gene3D Phosphorylase Kinase; domain 1 933 1027 - -
Amo12g1951 1220 Pfam Protein tyrosine and serine/threonine kinase 941 1203 IPR001245 GO:0004672|GO:0006468
Amo12g1951 1220 SMART serkin_6 940 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1951 1220 Gene3D Transferase(Phosphotransferase) domain 1 1028 1217 - -
Amo12g1951 1220 Gene3D - 188 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1951 Amo-Chr12 92783464 92791368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1951 13 301 MAP Kinase Kinase Kinase AT1G16270 36.755 1.75e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Amo12g1951 PK_Tyr_Ser-Thr 3.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1951 - - adu:107474844 2435.6