Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1928 ATGGATATTCTCATTTCAGTTGCTGCAAAAATAGCTGAGTACACTGTAGCACCTATTGGAAGGCAAGTTGGTTATCTAATTTTCTACAAAGCCAAATTTAAAGAGCTAAGGGACCGTGTCAGTGATCTTGAATACAAAAGAGACGAAATCAAGCAACGTGTTGAAGAAGAAAGAAGGAATGGGAAAACAACTTCTGATGTTGTGCAGAATTGGTTGAAGAATGTGGATGAAGCCATTGGAGACGTAACTCAACTTCAAAATGATCCTAGTCATGCAAAGGCTGGATGTTCTAGGTGGTCATTTCCTAATGTGGTGACACGCCATCAACTCAGTAGAAAAGCTACAAAAGTTGCCAAAAAAGTTGTTGAAGTACGGGGAGAAGGGGACTTTTCCCAGGTAGCTTACCGTCCTAAACTTGATGCAGTGTCAGCATTTACTACAAGGAGTAGTCAAAACTTGGAGTCAAGGAAACTAATTATGGAGAATATCATGCATGCTCTAAGAGACCCCAAAGTAAGCATGGTTGGAGTCTACGGGCTTGGTGGTGTTGGTAAGACCACTCTCGTTGAAGAAGTTTATCAAATAGCTAAGGAAAACCAGTTGTTTGATGAGGTGGTTATGGCCACCATTTCCAAAACACCAGACATCAAAACCGTTCAAGAGGAGATTGCTGATCAGTTGGGTCTTCGTTTTGAAGAGGTAACTGTTGCTGGTAGAGCACCTCGCCTATACGAGAGAATCAAAAAGGAGAAAACCATCCTTCTCATACTGGATGATCTTTGGGAAGCCCTTGACTTGAAGAAAGTAGGCATTTCCTCTGATGGTGAACATAATGGCTGCAAATTATTGATGACTTCTAGAACCTTAGATTTGCTACGACAGATGGGAGTCAAAGAACATTTTAGACTAGAAGTTTTAAATGAAGAAGAATCGTGGAGCTTGTTCCAATCTAGGGCTAATAATTTAGACAAAGAACCCGACAAGCATCAAATTGCATTCCAGGTGGCAAAAAAGTGTGCAGGATTGCCTATTCTCATAGTTACTATGGCGCGCTCATTGATAGATCAAAACATTCATGCGTGGAAAGATGCTTTGAGCCAATTAGAAAAGGTTGATAATGAAGAGTTGCAGGAGATAACTTATTCAGCTTTGGAGTTAAGTTACAAAAGGCTAAAAGGCAATGAAATGAAAGCTTTTTTCTTGCTCTGTGCAACAATTGGTAAAAAGCCTTTTGTTGATGACCTATTCAAATATGGAATGGGTCTAGGTATATTCAACAGAACAAATACAATGGAAGGTGCCAGAAATAGGCTTCACAACATGATAAGTGCATTAAAGGCATCTTGTTTGTTGTTAGAAGATGACAAAAGCACAACAAGGGTCAAAATGCATGATGATGTTCGTGAAGTGGCTATCTCCATCGCTTATAGGGATTATCACATATTAGCCAAGTACGGAGATAAGTTGAGGGAATTTCCCAAAATGGATATTCTTAGCAACTGCTCCCAGATCATTCTGCACAATGGTGGTTTTCGCCAGCTTCCTGAAAAGTTAGATGGTCATAATCTAAAATTTTTCCACTTGCGTCATTTTGACCTATCTCTGGAAATCCCTAATTTCTTTTTTGCGGAAACAAAATTCCTTCAAGTTTTAGATTTAACAGGCTTGAACTTGACTTCACTGCCCACTTCTTTTCTTTCCCTAACTAATCTTAAAACTTTGTGTTTGGATCATTGTGTTCTGGAAAGTATTGATGCAGTAGGAGCTTTAAAAAATTTAGAAATACTGAGTCTCTTAAAGTCATCGATGATAAAACTTTCAAGCGAAATAGGAAAATTGAGTCATTTAAGAATGCTCGATTTGAGTCATTCAGGGATTGAAATCATCCCAGCAGGCGTCATATCAAGCTTGATCAAATTGGAGGAGTTGTACATGGGCAATACCTCCATTAAGTGGAAGATTGAGAATTCAGACAATCAAGATGAAAATGCCAGCCTTGATGAACTTCGTCAGTTGTCAAACCTAACAACTCTAGAGCTACAGATACAAGAGGCATGGATGTTGCCAAGAGACTTGATGTTTGATAAATTAGAAAGGTTCAAAATTGTTATTGGAGACGTTTGGGAATGGGCTGATATTGACGACGTCACATTGAAAACATTGAAGCTCAAGCTTGGCACCAATATTCACTTGGAGCATGGGATCAAAGGATTGATCAGAAGAGCAGAGAATTTGTATTTGGATGAAGTTGAAGGCATTTCGAATGTACTCTATCAATTGAATGGGGATGGATTTCCTCAACTGAAGCACCTCCACATCCAAAATAATGCCTTAATTCAGCACATCATTGATTTTACAGAGAGGTCTCATATTCCAACCCCATTTCCAAACCTGGAAAAACTGGTGATTCAGAATCTTGGTAAGATGGAGAAAATTTGTCATGGGCCACTTGCAGTTGGTTTCTTCTCCAAGCTCCGAGCCATCAAAGTTGAAAAATGTAATAAAGTAAAATATCTTCTCTCTGTATCCATGCTTAAAGGGATGCCTCAGCTTGCAGAGTTGGAAATTTCTGAATGCAATCTTATGGAAAAGGTAGTGTTTGAAGATGATGATGCAAGTGCAATGAATGACGAAACTGGCGAAACCATTCAGTTTCCATTGCTCCATTCTCTGACTCTACAACATTTGGATGCGCTTGAATGCTTCTATTCTCATCAGCCAACATCTTCCCCAATATCCCTTTTCAATAATCAAGTTGTATTTCTTAATTTGGACACACTCAAGTTGAGCTCGCTCAATTTGAACAAAATTTGGAAGGATAATCGACACTATTTTTGCAAATTAAGAAATTTGATTGTTGAGAATTGTGATGGTCTAAAGTATTTGTTCTCATCTGCCATGGTGGAGAGTTTTTCCAACCTCATAAAGCTTGAAATAAGTGAATGCCATCTAATGGAAGAGATAATAGCTGTAGAAGATAGTGACAACAATATTGTCACACTAGAAGAGGTTCGATTTTTCAAATTGCAAACAATTATCTTGAAGAATATGAAGAGCTTGAAGAAAATATGGCACAAAGAATTTTCTAAAGTAAAGACTTTACAAGTAAAAAATTGTGAGAAAATTAGAGCAATTTTTTCTTCTTCAATGCAAAAGGTATATAATGATCTTGAGACATTAATGGTTACTGACTGTGCTTCGGTAGAAGAGATATTTCAACTGAGTTCTGATGAAAATTATAGTACAGAACAAACACAGCTGAAAAAAATTACTCTAAAAGGATTGTCGAAGTTAAAACAAATATGGAGCAAGGATCCTGAAAAAGCTCTTAATTTTTGCAATCTAGAGGAAATAAGTGTAGAGATTTGCAAAGACTTGGAATTTGTATTTCCATGTTCAGTAGCCACAAGTTGCTCACATCTTAAAGAATTTACAATTAAATGGTGTGAAAACATGAAGGAAATTATTGCATTCAAGGAAGAACCCATGTTCTCATCTATTTCCTTTGAGTTTAACCATTTAAATACTTTGGTGCTTTGGGACTTGCATAAGCTCAAAGGGTTCTATGCACGAAATTACACATTATCATGTCCATCTTTGAGAAAATTAGATATTACTGGATGTGTGAAGTTAAATTTGTACATAACTCTTTCTACAAGTAGTCATCAAAAGCTTTCAGATGAAGAGTATATTATTTCAACACAGCAACATTTGGTAGCTGAACAGGTAATGCCTAATTTAGAGCACTTGAGAATAGATGAAAAGGATGCTGCCAACATATTGCAAATTCAAAATATAGGTTCCTTCTTCAACAAAATATCATTTCTTGGTCTATCCAATTACAAGACCGAAGGTTCTGCTTTTCCTGATCAGGTTCTGCAGAATATATGCAGTTTGAAACGGCTAGTTGTTGAGCTGAGTTCCTTTAAGAAGATATATTTCAAGATAAAAGGCTTACAAATGAAAAAAATTGTGAAAAGCTCCAAAAGTTAA 3993 0.3709 MDILISVAAKIAEYTVAPIGRQVGYLIFYKAKFKELRDRVSDLEYKRDEIKQRVEEERRNGKTTSDVVQNWLKNVDEAIGDVTQLQNDPSHAKAGCSRWSFPNVVTRHQLSRKATKVAKKVVEVRGEGDFSQVAYRPKLDAVSAFTTRSSQNLESRKLIMENIMHALRDPKVSMVGVYGLGGVGKTTLVEEVYQIAKENQLFDEVVMATISKTPDIKTVQEEIADQLGLRFEEVTVAGRAPRLYERIKKEKTILLILDDLWEALDLKKVGISSDGEHNGCKLLMTSRTLDLLRQMGVKEHFRLEVLNEEESWSLFQSRANNLDKEPDKHQIAFQVAKKCAGLPILIVTMARSLIDQNIHAWKDALSQLEKVDNEELQEITYSALELSYKRLKGNEMKAFFLLCATIGKKPFVDDLFKYGMGLGIFNRTNTMEGARNRLHNMISALKASCLLLEDDKSTTRVKMHDDVREVAISIAYRDYHILAKYGDKLREFPKMDILSNCSQIILHNGGFRQLPEKLDGHNLKFFHLRHFDLSLEIPNFFFAETKFLQVLDLTGLNLTSLPTSFLSLTNLKTLCLDHCVLESIDAVGALKNLEILSLLKSSMIKLSSEIGKLSHLRMLDLSHSGIEIIPAGVISSLIKLEELYMGNTSIKWKIENSDNQDENASLDELRQLSNLTTLELQIQEAWMLPRDLMFDKLERFKIVIGDVWEWADIDDVTLKTLKLKLGTNIHLEHGIKGLIRRAENLYLDEVEGISNVLYQLNGDGFPQLKHLHIQNNALIQHIIDFTERSHIPTPFPNLEKLVIQNLGKMEKICHGPLAVGFFSKLRAIKVEKCNKVKYLLSVSMLKGMPQLAELEISECNLMEKVVFEDDDASAMNDETGETIQFPLLHSLTLQHLDALECFYSHQPTSSPISLFNNQVVFLNLDTLKLSSLNLNKIWKDNRHYFCKLRNLIVENCDGLKYLFSSAMVESFSNLIKLEISECHLMEEIIAVEDSDNNIVTLEEVRFFKLQTIILKNMKSLKKIWHKEFSKVKTLQVKNCEKIRAIFSSSMQKVYNDLETLMVTDCASVEEIFQLSSDENYSTEQTQLKKITLKGLSKLKQIWSKDPEKALNFCNLEEISVEICKDLEFVFPCSVATSCSHLKEFTIKWCENMKEIIAFKEEPMFSSISFEFNHLNTLVLWDLHKLKGFYARNYTLSCPSLRKLDITGCVKLNLYITLSTSSHQKLSDEEYIISTQQHLVAEQVMPNLEHLRIDEKDAANILQIQNIGSFFNKISFLGLSNYKTEGSAFPDQVLQNICSLKRLVVELSSFKKIYFKIKGLQMKKIVKSSKS* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1928 1330 Gene3D - 305 392 IPR042197 -
Amo12g1928 1330 PRINTS Disease resistance protein signature 174 189 - -
Amo12g1928 1330 PRINTS Disease resistance protein signature 339 353 - -
Amo12g1928 1330 PRINTS Disease resistance protein signature 247 261 - -
Amo12g1928 1330 PRINTS Disease resistance protein signature 611 627 - -
Amo12g1928 1330 Gene3D - 141 303 IPR027417 -
Amo12g1928 1330 Gene3D Ribonuclease Inhibitor 712 867 IPR032675 -
Amo12g1928 1330 Coils Coil 68 88 - -
Amo12g1928 1330 Gene3D Ribonuclease Inhibitor 456 703 IPR032675 -
Amo12g1928 1330 SUPERFAMILY L domain-like 456 987 - -
Amo12g1928 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 403 IPR027417 -
Amo12g1928 1330 SMART AAA_5 171 311 IPR003593 -
Amo12g1928 1330 PANTHER - 23 993 - -
Amo12g1928 1330 PANTHER - 1002 1084 - -
Amo12g1928 1330 PANTHER RPP4C3 1002 1084 - -
Amo12g1928 1330 PANTHER - 1112 1211 - -
Amo12g1928 1330 SUPERFAMILY RNI-like 1094 1305 - -
Amo12g1928 1330 Gene3D Ribonuclease Inhibitor 1075 1320 IPR032675 -
Amo12g1928 1330 PANTHER RPP4C3 23 993 - -
Amo12g1928 1330 PANTHER RPP4C3 1112 1211 - -
Amo12g1928 1330 Gene3D Ribonuclease Inhibitor 881 1074 IPR032675 -
Amo12g1928 1330 Pfam NB-ARC domain 160 389 IPR002182 GO:0043531
Amo12g1928 1330 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1928 Amo-Chr12 92035254 92040926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1928 172 622 WRKY Transcription Factor Family AT5G45050 23.658 1.03e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1928 - - aip:107625541 2546.15