Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1904 ATGATATTATCTAAATTACCCAACCTAACCCTAAGCCACCCACACCATTCTCATCTCCTCCAATCTTCTTCTCGCGTTCTCGTCTTTTTTGCCACCCGCTCCGGCCAGCTCACGGAGGAAGAAGCAAATCAGATCTGTTTCAAAGAGGATTCCGGGCACGGATTGTGGAACCTTCTCAAAGCTTCTTCCATCTTACTGTTCCAATTTTGCAAAGGATTTTGGTGTTCTCATGATCCCAACAGTACCACAATAGCTTGCTGTCCATTGCTGGAATCTCTGGATTTTGCCAGTGGTCCTCGTGAAGATGCAACTCGTATTGGGTCTGCTGGAGTTGTTAGGAGGCAGGCTGTTGATATCTTGCCTCTTTGCCGTGTCAATCAGGCCATCTATCTTCTAACAACAGGTGCGCGAGAAGCTGCTTTCAGGAACATTAAGACAATTGTCGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAAGCTATGCTATCAAGAAAAAAGGATGAGATAGAGAGAGTCGCCAAGGCTAATCGTTAA 537 0.4544 MILSKLPNLTLSHPHHSHLLQSSSRVLVFFATRSGQLTEEEANQICFKEDSGHGLWNLLKASSILLFQFCKGFWCSHDPNSTTIACCPLLESLDFASGPREDATRIGSAGVVRRQAVDILPLCRVNQAIYLLTTGAREAAFRNIKTIVECLADELINAAKAMLSRKKDEIERVAKANR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1904 178 SUPERFAMILY Ribosomal protein S7 97 178 IPR036823 -
Amo12g1904 178 Pfam Ribosomal protein S7p/S5e 98 178 IPR023798 -
Amo12g1904 178 PANTHER 40S RIBOSOMAL PROTEIN S5 96 178 - -
Amo12g1904 178 Coils Coil 156 176 - -
Amo12g1904 178 Gene3D Ribosomal protein S7 domain 89 178 IPR036823 -
Amo12g1904 178 PANTHER RIBOSOMAL PROTEIN S7 96 178 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1904 Amo-Chr12 90532529 90536195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1904 97 178 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 84.884 5.90e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1904 K02989 - ccaj:109803317 136.732