Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1890 ATGGAACTGAGGGATGCATGGGCTTGCTTCTTTCTTTTTTATAGCTTCTGGTTTGTCACTTTCTGTGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAAAAAGTTTCATTGATTCAAATAACATTTCATGGGTTCCAGACACAAATTACATAACCACAGGCAAGACTACAAACATTACTTACACTGATGGTTCAGTCTCAACAAATGTCTCGGCACGATTCTTCTCGAATTCAAGACGGCGAAAATGTTACAGAATACCAATGAACAATGCAACTAATTTGGTTCTTGTTAGAGCAAATTTCGTGTACAAGAATTATGATGGACTTGCAGTGCCTCCTACATTCTCTGTTTCTCTTGGGACTTCAATTGCTGCCACTGTTAATCTTTCTGAGCATGATCCATGGACTGAAGAGTTCTTATGGATGGTTAATAAGGACACTCTGCCACTCTGTTTGATTGCGGTTTCAGATGGTGGTTCGCCGGTAATTTCTTCGCTTGAAATCCGGCCGCTTCCACGAGCCGCCTACATGAATGCTATGGCTGACTTTCCAAATAAGTTGCTAAGGAAGAGCTACCGGATCGATTGCGGCTACACCGGCGATTCTATCCGGTATCCTTTGGATCCATTTGACAGAATATGGGATTCTGATACAAGATTCACACCCTTTCATGCTACAACTGGATTCAGCATTCAACTTGGATTCAATCCAAGTAATGTTATGGAACAACCACCAGTAACTGTTCTTCAAACCGGCCGAGTTTTGGCGCGAAGGAACACGCTGACGTATAACCTGCCTCTGGACGAAGAATTGGGAGACTACTACATCATCCTTTACTTTGCTGGAATTCTTCCTCTGTTTCCATCATTTGATGTATTCATAAATGGAGATCTTGTAAAACCAAACTATACAATCATGAGATCAGAGATCAGTGCTTTATATTTTACGCGAAAGGGGATCACAAGATTGAGTATTACACTCAAGAACAACACCTTTTACCCTCTCATCAATGCATTTGAAGTTTACAAGATGCTTCATATTCCATCTGAAGCCTCCTCAACCACAGTTTCAGCAATGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAAGATGATCCATGCTCTCCCTCTCCTTGGGAAAACGTTAATTGCCAAGGAAACCTTGTTACATCATTGGATCTTTCAAACATAAATTTGAGATCAATTGGTCCTACATTTGGTGACTTGTTAGACCTTAAAACATTGGATTTGCACAACTCATCTCTTTCTGGTGAAATACAAAATTTGGGTAGCTTGCAACGTCTTCAGATACTGAACTTGAGTTTCAATCAACTAACATCCTTTGGTGCAGAGCTGGAGAATTTAATTAACCTTAGAGTACTAGACTTGCAGAACAATAGTCTAAAAGGAACAGTGCCGGAAAGCTTGGGAGAGTTGGAGGATCTCCACTTATTGAATTTAGAAAATAATAGACTAGAAGGTCCATTACCACAGACATTGAACAAGCCTACTTTAGAGATCAGAGCATCAGGGAACTTGTGCCTAACATTTTCCACAACCACATGTGATGATGCTTCATCCAATTCTACAAATGAGACACCTCAAGTCACTACAGTTCCTGAAAATCAGCACAATGTGCATAAACATCACCTAGCAATCATTCTAGGAGCAGTAGTTGGAGGAGTTACACTAGCCTTTCTATTACTAAGCATTTCACTTTTCTTATATAAGACTAAAATGCAACATGAAGTAGCCTCACACACATCAAGGTCTGATAGGGATATGAGGAACTGGGGTGCAGCAAGAGTGTTTTCCTACAAAGAGATTAAATTAGCAACAAGAAATTTCAAAGAAATTATAGGAAGGGGAAGTTTTGGACCTGTTTACCTTGGAAAGCTTCCAGATGGAAAATTAGTAGCCGTCAAAGTTCGCTCTGACAAATCCCAACTGGGGGCTGATTCTTTTGTCAATGAGGTTAATATTTTGTCAAGCATACGGCATCAGAATCTTGTGTCGTTGGAAGGATTTTGCAATGAATCAAAGCATCAAATATTAGTTTATGAGTACTTGCCTGGTGGATCCCTTGTTGATCACCTATATGGTACAAAGAGTAAAAAAACTTCTCTAAGCTGGGTTCGGAGGTTGAAAATTGCTGTTGATGCAGCAAAAGGATTGGATTATTTGCACAACGGAAGCGAACCGCGAATCATTCACCGTGACATAAAGTGCAGCAACATCCTCTTGGACATGGACATGAATGCCAAGGTCTGTGACTTAGGCCTTTCTAAGCAAGTCATCCATGCTGATGCAACTCATGTCACCACTCTTGTTAAAGGAACTGCTGGTTATCTTGATCCAGAGTACTATTCCACTCAGCAGTTGACTGAGAGAAGTGATGTATACAGTTTTGGAGTGGTTCTTTTAGAACTTATTTGTGGAAGAGAGCCATTGAGTCACTCAGGGACCCCTGACTCATTCAATTTGGTCTTATGGGCCAAGCCTTACTTACAGGCAGGTGCATATGAGATTGTGGATGAAGACATAAGAGGAACTTTTGATCCTTTAAGCATGAAAAAAGCATCTTTGATTGCTGTAAAATCAGTGGAGAGGGATGCTTCACAGAGACCATGCATTGGACAAGTATTAGCAGAATTAAAGGAGGCCTATACTATTCAACTCAGATTCCTTGAAGAATCTTGTCAAAACAACAATTGA 2730 0.4055 MELRDAWACFFLFYSFWFVTFCEQDGFLSLSCGGRKSFIDSNNISWVPDTNYITTGKTTNITYTDGSVSTNVSARFFSNSRRRKCYRIPMNNATNLVLVRANFVYKNYDGLAVPPTFSVSLGTSIAATVNLSEHDPWTEEFLWMVNKDTLPLCLIAVSDGGSPVISSLEIRPLPRAAYMNAMADFPNKLLRKSYRIDCGYTGDSIRYPLDPFDRIWDSDTRFTPFHATTGFSIQLGFNPSNVMEQPPVTVLQTGRVLARRNTLTYNLPLDEELGDYYIILYFAGILPLFPSFDVFINGDLVKPNYTIMRSEISALYFTRKGITRLSITLKNNTFYPLINAFEVYKMLHIPSEASSTTVSAMQVIQQSTGLDLGWQDDPCSPSPWENVNCQGNLVTSLDLSNINLRSIGPTFGDLLDLKTLDLHNSSLSGEIQNLGSLQRLQILNLSFNQLTSFGAELENLINLRVLDLQNNSLKGTVPESLGELEDLHLLNLENNRLEGPLPQTLNKPTLEIRASGNLCLTFSTTTCDDASSNSTNETPQVTTVPENQHNVHKHHLAIILGAVVGGVTLAFLLLSISLFLYKTKMQHEVASHTSRSDRDMRNWGAARVFSYKEIKLATRNFKEIIGRGSFGPVYLGKLPDGKLVAVKVRSDKSQLGADSFVNEVNILSSIRHQNLVSLEGFCNESKHQILVYEYLPGGSLVDHLYGTKSKKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDIKCSNILLDMDMNAKVCDLGLSKQVIHADATHVTTLVKGTAGYLDPEYYSTQQLTERSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGAYEIVDEDIRGTFDPLSMKKASLIAVKSVERDASQRPCIGQVLAELKEAYTIQLRFLEESCQNNN* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1890 909 Gene3D - 192 347 - -
Amo12g1890 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Amo12g1890 909 SMART serkin_6 619 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1890 909 Gene3D Ribonuclease Inhibitor 355 529 IPR032675 -
Amo12g1890 909 SUPERFAMILY Protein kinase-like (PK-like) 599 890 IPR011009 -
Amo12g1890 909 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 903 - -
Amo12g1890 909 Gene3D Phosphorylase Kinase; domain 1 591 694 - -
Amo12g1890 909 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Amo12g1890 909 ProSiteProfiles Protein kinase domain profile. 619 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1890 909 SMART LRR_typ_2 460 484 IPR003591 -
Amo12g1890 909 SMART LRR_typ_2 437 459 IPR003591 -
Amo12g1890 909 Gene3D Transferase(Phosphotransferase) domain 1 695 905 - -
Amo12g1890 909 CDD STKc_IRAK 625 892 - -
Amo12g1890 909 Pfam Leucine rich repeat 439 497 IPR001611 GO:0005515
Amo12g1890 909 PANTHER OS07G0107800 PROTEIN-RELATED 10 903 - -
Amo12g1890 909 SUPERFAMILY L domain-like 359 509 - -
Amo12g1890 909 Pfam Protein tyrosine and serine/threonine kinase 621 884 IPR001245 GO:0004672|GO:0006468
Amo12g1890 909 Pfam Malectin-like domain 30 346 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1890 Amo-Chr12 89954641 89966748 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1890 10 908 Receptor kinase-like Gene Family AT5G48740 61.958 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo12g1890 Malectin_like 5.3e-57 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1890 - - gmx:100812804 1431