LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g1889	ATGGTGTCGGGTTCAGGGATATGCGCATCACGGGTGGTGGTGGATGCAAGGCACCACATGCTTGGTCGTCTGGCATCAATAGTGGCGAAGGAGCTTCTGAACGGTCAGAAGGTTGTGGTGGTTAGGTGCGAGGAGATCTGCATTTCCGGTGGGCTCGTGAGACAGAAAATGAAGTACATGAGGTTCCTCCGTAAGAGGATGAACACTAAGCCCTCTCATGGTCCCATCCATTTCCGTGCTCCTTCCAAGATCTTCTGGCGCACCGTTCGAGGTATGATACCACACAAGACAAAGCGTGGGGAAGCTGCACTTGCTCGTTTGAAGGTTTTTGAGGGAATCCCTCCTCCCTATGACAAGACAAAGAGGATGGTCATCCCTGATGCTCTGAAGGTTCTGAGGCTTCAGAAGGGACACAAATTCTGCTTGCTTGGTAGATTGTCATCTGAGGTTGGATGGAACTACTACGATACCATCACTGAGCTGGAGAAGAAGAGAAAGGAGAAGGCACATTTGTTGTACGAGAGAAAGAAGCAGCTCAACAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGAGGAGAAGCTTGGTTCCCAACTTGATATCCTTGCTCCAGTCAAATACTGA	621	0.496	MVSGSGICASRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVFEGIPPPYDKTKRMVIPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTITELEKKRKEKAHLLYERKKQLNKLRVKAEKVAEEKLGSQLDILAPVKY*	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g1889	206	ProSitePatterns	Ribosomal protein L13 signature.	89	112	IPR023563	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	Gene3D	Ribosomal protein L13	8	154	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	TIGRFAM	L13_A_E: ribosomal protein uL13	12	154	IPR005755	GO:0003735\|GO:0006412\|GO:0015934
	Amo12g1889	206	PANTHER	60S RIBOSOMAL PROTEIN L13A-4	1	206	-	-
	Amo12g1889	206	PANTHER	RIBOSOMAL PROTEIN L13	1	206	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	Pfam	Ribosomal protein L13	12	115	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	Gene3D	-	156	206	-	-
	Amo12g1889	206	CDD	Ribosomal_L13	12	113	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	Hamap	50S ribosomal protein L13 [rplM].	11	135	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g1889	206	SUPERFAMILY	Ribosomal protein L13	12	154	IPR036899	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g1889	Amo-Chr12	89898941	89902022	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g1889	1	206	Cytoplasmic Ribosomal Protein Gene Family	AT5G48760	90.777	1.71e-141	391

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g1889	K02872		-	gmx:100499978	396.741

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g1889	12	89898941	89902022	Amo12g1889	12	89898941	89902022	ECH