Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1881 ATGGAACTGAGGGATGCATGGGCTTGCTTCTTTCTTTTTCATAGCTTCTGGTTTGTCACTTTCTGTGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAAAAAGTTTCATTGATTCAAATAACATTTCATGGGTTCCAGACACAAATTACATAACCACAGGCAAGACTACAACCATTACTTACACTGATGGTTCAGTCTCAACGAATGTCTCGGCGCGATTCTTCTCGAATTCAAGACGGCGAAAATGTTACAGAATACCAATGAACAATGCAACTAATTTGGTTCTTGTTAGAGCAAATTTCGTGTACAAGAATTATGATGGACTTGCAGTGCCTCCTACATTCTCTGTTTCTCTTGGGACTTCAATTGCTGCCACTGTTAATCTTTCTGAGCATGATCCATGGACTGAAGAGTTCTTATGGATGGTTAATAAGGACACTCTGCCACTCTGTTTGATTGCGGTTTCAGATGGTGGTTCGCCGGTAATTTCTTCGCTTGAAATCCGGCCGCTTCCACGAGCCGCCTACATGAATGCTATGGCTGACTTTCCAAATAAGTTGCTAAGGAAGAGCTACCGGATCGATTGCGGCTACACCGGCGATTCTATCCGGTATCCTTTGGATCCATTTGACAGAATATGGGATTCTGATACAAGATTCACACCCTTTCATGCTACAACTGGATTCAGCATTCAACTTGGATTCAATGCAAGTAATGTTATGGAACAACCACCAGTAACTGTTCTTCAAACCGGCCGAGTTTTGGCGCGAAGGAACACGCTGACGTATAACCTGCCTCTGGACGAAGAATTGGGAGACTACTACATCATCCTTTACTTTGCTGGAATTCTTCCTGTGTTTCCATCATTTGATGTATTGATAAATGGAGATCTTGTAAAACCAAACTATACAATCATGAGATCAGAGATCAGTGCTTTGTATTTTACGCGAAAGCGGATCACAAGATTGAGTATTACACTCAAGAACAACAGCTTTTACCCTCTCATCAATGCATTTGAATTTCAGCAATGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAAGATGATCCATGCTCTCCCTCTCCTTGGGAAAACGTTAATTGCCAAGGAAACCTTGTTACATCATTGTCTGGATCTTTCAAACATAAATTTGAGATCAATTGGTCCTACATTTGGTGACTTGTTAGACCTTAAAACATTGGATTTGCACAACTCATCTCTTTCTGGTGAAATACAAAATTTGGGTAGCTTGCAACGTCTTCAGATACTTAACTTGAGTTTCAATCAACTAATATCCTTTGGTGCAGAGCTGGAGAACTTGATTAACCTTAGAGTACTAGACTTGCAGAACAATAGTCTAAAAGGAACAGTGCCTGAAAGCTTGGGAGAGTTGGAGGATCTCCACTTATTGAATTTAGAAAATAATAGACTAGAAGGTCCATTACCACAGACATTGAACAAGCCTACTTTAGAGATCAGAGCATCAGGGAACTTGTGCCTAACATTTTCCACAACCACATGTGATGATGCTTCATCCAATTCTACAAATGAGACACCTCAAGTCACTACAGTTCCTGAAAATCAGCACAATGTGCATAAACATCACCTAGCAATCATTCTAGGAGCAGTAGTTGGAGGAGTTACACTAGCCTTTCTATTACTAAGCATTTCACTTTTCTTATATAAGACTAAAATGCAACATGAAGTAGCCTCACACACATCAAGGTCTGATAGGGATATGAGGAACTGGGGTGCAGCAAGAGTGTTTTCCTACAAAGAGATTAAATTAGCAACAAGAAATTTCAAAGAAATTATAGGAAGGGGAAGTTTTGGACCTGTTTACCTTGGAAAGCTTCCAGATGGAAAATTAGTAGCCGTCAAAGTTCGCTCTGACAAATCCCAACTGGGGGCTGATTCTTTTGTCAATGAGGTTAATATTTTGTCAAGCATACGGCATCAGAATCTTGTGTCGTTGGAAGGATTTTGCAATGAATCAAAGCATCAAATATTAGTTTATGAGTACTTGCCTGGTGGATCCCTTGTTGATCACCTATATGGATTGGATTATTTGCACAACGGAAGCGAACCGCGAATCATTCACCGTGACATAAAGTGCAGCAACATCCTCTTGGACATGGACATGAATGCCAAGGTCTGTGACTTAGGCCTTTCTAAGCAAGTCATCCATGCTGATGCAACTCATGTCACCACTCTTGTTAAAGGAACTGCTGGTTATCTTGATCCAGAGTACTATTCCACTCAGCAGTTGACTGAGAGAAGTGATGTATACAGTTTTGGAGTGGTTCTTTTAGAACTTATTTGTGGAAGAGAGCCATTGAGTCACTCAGGGACCCCTGACTCATTCAATTTGGTCTTATGGGCCAAGCCTTACTTACAGGCAGGTGCATATGAGATTGTGGATGAAGACATAAGAGGAACTTTTGATCCTTTAAGCATGAAAAAAGCATCTTTGATTGCTGTAAAATCAGTGGAGAGGGATGCTTCACAGAGACCATGCATTGGACAAGTATTAGCAGAATTAAAGGAGGCCTATACTATTCAACTCAGATTCCTTGAAGAATCTTGTCAAAACAACAATTGA 2619 0.407 MELRDAWACFFLFHSFWFVTFCEQDGFLSLSCGGRKSFIDSNNISWVPDTNYITTGKTTTITYTDGSVSTNVSARFFSNSRRRKCYRIPMNNATNLVLVRANFVYKNYDGLAVPPTFSVSLGTSIAATVNLSEHDPWTEEFLWMVNKDTLPLCLIAVSDGGSPVISSLEIRPLPRAAYMNAMADFPNKLLRKSYRIDCGYTGDSIRYPLDPFDRIWDSDTRFTPFHATTGFSIQLGFNASNVMEQPPVTVLQTGRVLARRNTLTYNLPLDEELGDYYIILYFAGILPVFPSFDVLINGDLVKPNYTIMRSEISALYFTRKRITRLSITLKNNSFYPLINAFEFQQCRLFSSPLDWILDGKMIHALPLLGKTLIAKETLLHHCLDLSNINLRSIGPTFGDLLDLKTLDLHNSSLSGEIQNLGSLQRLQILNLSFNQLISFGAELENLINLRVLDLQNNSLKGTVPESLGELEDLHLLNLENNRLEGPLPQTLNKPTLEIRASGNLCLTFSTTTCDDASSNSTNETPQVTTVPENQHNVHKHHLAIILGAVVGGVTLAFLLLSISLFLYKTKMQHEVASHTSRSDRDMRNWGAARVFSYKEIKLATRNFKEIIGRGSFGPVYLGKLPDGKLVAVKVRSDKSQLGADSFVNEVNILSSIRHQNLVSLEGFCNESKHQILVYEYLPGGSLVDHLYGLDYLHNGSEPRIIHRDIKCSNILLDMDMNAKVCDLGLSKQVIHADATHVTTLVKGTAGYLDPEYYSTQQLTERSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGAYEIVDEDIRGTFDPLSMKKASLIAVKSVERDASQRPCIGQVLAELKEAYTIQLRFLEESCQNNN* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1881 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Amo12g1881 872 Pfam Malectin-like domain 30 343 IPR024788 -
Amo12g1881 872 SUPERFAMILY L domain-like 380 495 - -
Amo12g1881 872 PANTHER OS07G0107800 PROTEIN-RELATED 10 343 - -
Amo12g1881 872 PANTHER OS07G0107800 PROTEIN-RELATED 692 866 - -
Amo12g1881 872 PANTHER OS07G0107800 PROTEIN-RELATED 392 692 - -
Amo12g1881 872 Gene3D - 192 345 - -
Amo12g1881 872 SUPERFAMILY Protein kinase-like (PK-like) 585 853 IPR011009 -
Amo12g1881 872 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 343 - -
Amo12g1881 872 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 392 692 - -
Amo12g1881 872 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 692 866 - -
Amo12g1881 872 SMART serkin_6 605 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1881 872 Gene3D Ribonuclease Inhibitor 369 498 IPR032675 -
Amo12g1881 872 Pfam Protein kinase domain 607 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1881 872 Gene3D Phosphorylase Kinase; domain 1 577 680 - -
Amo12g1881 872 ProSiteProfiles Protein kinase domain profile. 605 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1881 872 Gene3D Transferase(Phosphotransferase) domain 1 684 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1881 Amo-Chr12 89627652 89639262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1881 10 871 Receptor kinase-like Gene Family AT5G48740 56.478 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Amo12g1881 Malectin_like 1.2e-54 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1881 - - gmx:100812804 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1881 12 89627652 89639262 Amo12g1881 12 89627652 89639262 ECH