Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1880 ATGGCCTCCTCACCCACACCCACACCCACACCCTCATCTCCAAAACTAATTGCTCCAATTACCACCATAACCGCTACCACAACCACAACCACAACAACAAACACCACAAACGACGCCGTTTCGCCCACCAAGAAACCCCAACCGATTCCATGGACTCACCAGGAGACCGTTAACCTGATCAGGGCGTACCAGGAGAAATGGTACGCCTTGAAGCGCGGCCCGCTCCGGGCCAACCAGTGGGAAGAGGTCGCCGTCGTCGTCGCCGCCCGCTGCGGCTACGACTTTAACCATCCTTGCAAGTCCGCCGTCCAGTGTCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGAGCCGAGAAGAAGCAACATCTTCTCACCACCTCCCGCGTCCCTGCCCGTGCCACGTGGCAGTATTATGGCCTTATGGATGAGCTGGAGCGTGGCCCAATGCCGATCTCCGCCCGGCCCATAACCTCCATGGCGCCTACGGGCGGCAACGACGAGTACGGTAATTACGGAAGTTTCGATCAAAATGACGATGATTTCATTGAGGAAAATGAAGAAAGGGAAAACTATATAAAATCAAAGAGTATTAATTATCTTCTTAGCAAGAAACCCTCAATGAACAAGTGTAGTGGGATTTTGAGGGATCGTGTTCCAAAAGGATTGTGGAGATTTGATGATGCTGACTATGATGATGATGATGTTAATTATCTTGATGATGATGATGATGATGATGATGATGATGGTAATTGTGGTGGTGGTGGTGGTGACGAGAGAGGAGTGGTAATGGTGGATGAGAGGGCTTTGGTTTCGGGTTTGAGTACAGAGATAAAAGACTTCACTGAGAGGTTCATTGGGATGGAGAATTTGAAGATGAGGATCGTGAAGGAAACTGAGAGGCGGAGGTTGGAGATGGAGAACAGGCGGATGGAGATGATCCTTGAGTCGCGGCAGCGGACCATTGATTCGATTGGGAGGGTGTTCGGGTCATCCAAGAGACTCAAGATGAGTGAAGGAAGCTGA 1026 0.5117 MASSPTPTPTPSSPKLIAPITTITATTTTTTTTNTTNDAVSPTKKPQPIPWTHQETVNLIRAYQEKWYALKRGPLRANQWEEVAVVVAARCGYDFNHPCKSAVQCRHKMEKLRQRHRAEKKQHLLTTSRVPARATWQYYGLMDELERGPMPISARPITSMAPTGGNDEYGNYGSFDQNDDDFIEENEERENYIKSKSINYLLSKKPSMNKCSGILRDRVPKGLWRFDDADYDDDDVNYLDDDDDDDDDDGNCGGGGGDERGVVMVDERALVSGLSTEIKDFTERFIGMENLKMRIVKETERRRLEMENRRMEMILESRQRTIDSIGRVFGSSKRLKMSEGS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1880 341 MobiDBLite consensus disorder prediction 24 50 - -
Amo12g1880 341 Gene3D - 51 118 - -
Amo12g1880 341 MobiDBLite consensus disorder prediction 235 252 - -
Amo12g1880 341 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 21 338 - -
Amo12g1880 341 Coils Coil 102 122 - -
Amo12g1880 341 MobiDBLite consensus disorder prediction 235 259 - -
Amo12g1880 341 Pfam Myb/SANT-like DNA-binding domain 50 145 IPR044822 -
Amo12g1880 341 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 21 338 IPR044823 -
Amo12g1880 341 Coils Coil 296 316 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1880 51 165 Trihelix Transcription Factor Family AT3G14180 26.087 5.38e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo12g1880 Myb_DNA-bind_4 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1880 - - adu:107474774 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1880 12 89430972 89432741 Amo12g1880 12 89430972 89432741 ECH