Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1875 ATGGCAGTTGATGCTATCACAAACATCAAGCTAGCCTATAGGGTGACTAGAAATTGGCTTGGAGATCCATGTGGCCCTGAAGCATACAAGTGGGATGGTCTAGATTGTAATTTTGATGGCGATGGGATCCCAAGAATCACTTCGATGAACTTGTCTACAAGTGGATTGACAGGACACATAGTTCCTGATCTCTTAAAGCTTACTATGCTAAAGTCATTGGATTTATCGAACAATAACCTAACTGGGGATGTTCCTTATTTTCTGGCACAACTGCAATCACTACAAAACTTAAACTTGGAGAACAACAACCTATCAGGTTCAATTCCAAATGAACTCTTTCAAAAACAAAGAGATGGTATATTATCATTAAGGGTGGGACAAAATCCAAATTTATGTGCCTCAACTTCATGCAACCAACAAACAAATGATACAAAGAAGAAAAAGCATAATGCAGTTATTATAGTGCTAGCATCAATTGCAGGGATATTGCTTCTTCTTGTGATTGCAGCAGTTATAACCTTTTACCAAAGCAAATATTATGATGTTGATAAAAGCATTATTCTTGGAAAGCCTCGTAATTCAATTAAGGGGTCAGAATTGGAATTGAAGCAACGACAATATTCATTTAATGAAGTTGTTAAGATCACCAACAGCTTTGATAGGATTCTTGGCAGAGGTGGATTTGGAACTGTTAAGCTTCTAATGAGAGTACATCACCGAAGTCTGACTTCTCTTATTGGTTATTGCAACGAAGAAACTAATATAGGACTCATCTATGAATATATGGCAAATAATGGAAACTTAAATGAATATCTTTCAGGAGGAAACAATAAGGAAAAGTCATTGAATTGGGAAGATAGACTTCGAATAACATTGGACGCAGCCCAAGGATTGGAATATCTGCATAATGGTTGTAAGCCACCTATAATCCACAGAGATGTAAAATGTACAAATATTCTATTAGATGAAAACTTTCATGCCAAACTAGCTGATTTTGGATTATCCAAATGTTTTGCTGTTGATGGTGATACACATGTGTCAACAATTGTCGCCGGAACTCCAGGCTACCTAGATCCTGAGTACACGACATCAAACAGACTAACAGAAAAAAGTGATGTGTATAGTTTTGGAGTAGTTCTTTTAAGGATAATCACAGGTCAACCGGTGATAATAGGAAGGGAAGATATGACTCATCATATAAGTCAATGGGTCAACTCCATGGTTGCTAAAGGGGATATAACAAAAATTGTTGACTCAAGGTTACAAGGAGATTTTGATAGCAACTCTGCATGGAGAGCGGTTGAAATAGCAATGGCCTCTGTGTCTGCCATTTCGATGGAAAGGCCATACATGACTGATATAGTAAAAGAGCTAAAGGAGTGTTTGGCTGCAGAGTTAGCTCGAAAACATAATAGTTGTGACATTCAAAACGAAGATTTAGTTGGGCACTTGGGCAGGTAA 1461 0.3751 MAVDAITNIKLAYRVTRNWLGDPCGPEAYKWDGLDCNFDGDGIPRITSMNLSTSGLTGHIVPDLLKLTMLKSLDLSNNNLTGDVPYFLAQLQSLQNLNLENNNLSGSIPNELFQKQRDGILSLRVGQNPNLCASTSCNQQTNDTKKKKHNAVIIVLASIAGILLLLVIAAVITFYQSKYYDVDKSIILGKPRNSIKGSELELKQRQYSFNEVVKITNSFDRILGRGGFGTVKLLMRVHHRSLTSLIGYCNEETNIGLIYEYMANNGNLNEYLSGGNNKEKSLNWEDRLRITLDAAQGLEYLHNGCKPPIIHRDVKCTNILLDENFHAKLADFGLSKCFAVDGDTHVSTIVAGTPGYLDPEYTTSNRLTEKSDVYSFGVVLLRIITGQPVIIGREDMTHHISQWVNSMVAKGDITKIVDSRLQGDFDSNSAWRAVEIAMASVSAISMERPYMTDIVKELKECLAAELARKHNSCDIQNEDLVGHLGR* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1875 486 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Amo12g1875 486 Gene3D Ribonuclease Inhibitor 5 121 IPR032675 -
Amo12g1875 486 SUPERFAMILY Protein kinase-like (PK-like) 198 458 IPR011009 -
Amo12g1875 486 Pfam Protein tyrosine and serine/threonine kinase 229 457 IPR001245 GO:0004672|GO:0006468
Amo12g1875 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Amo12g1875 486 Pfam Leucine Rich repeats (2 copies) 68 108 IPR025875 -
Amo12g1875 486 Gene3D Phosphorylase Kinase; domain 1 228 263 - -
Amo12g1875 486 ProSiteProfiles Protein kinase domain profile. 180 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1875 486 PRINTS Leucine-rich repeat signature 91 104 - -
Amo12g1875 486 PRINTS Leucine-rich repeat signature 70 83 - -
Amo12g1875 486 Gene3D Transferase(Phosphotransferase) domain 1 264 481 - -
Amo12g1875 486 SUPERFAMILY L domain-like 22 115 - -
Amo12g1875 486 SMART serkin_6 217 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1875 486 PANTHER PUTATIVE-RELATED 3 231 - -
Amo12g1875 486 PANTHER PUTATIVE-RELATED 231 474 - -
Amo12g1875 486 PANTHER OS07G0107800 PROTEIN-RELATED 3 231 - -
Amo12g1875 486 PANTHER OS07G0107800 PROTEIN-RELATED 231 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1875 Amo-Chr12 89257042 89267244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1875 3 478 Receptor kinase-like Gene Family AT1G51850 47.115 6.77e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo12g1875 PK_Tyr_Ser-Thr 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1875 - - ahf:112730230 922.539