Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1859 TATGTCGAGTTAGAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTTCTGGCTGAGGGGGATTTGGATCCATTCACAGAGGGGTTCTACCGGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTAGAAGTCCTGAGTTGTGTTCAACACCAAAATGTTGTTATGCTGATTGGATTTTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGAGACAGCGAGAACCATTAGAATGGGCTGCATGGCAAAAAATTGCCATTGGAGCTGCTCGTGGGTTACGATATCTTCATGAAGACTGTAGAGTGGGATGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGTGAGGTGGCAACCTGATGGAGACACGGGTGTGGAAACCCGAGTAATTGGAACATTCGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAGAAAGCTGATGTTTATTCATTTGGGGTGGTATTGGTGGAGCTTGTTATAGGGAGAAAAGCTGTGGATCTCACGCGGCCTAAGGGACAGCAGTGTCTTACTAAGTGGGCACAACCTCTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGAACCAATACTTAGAAAATGAGGTATATTGCATGTTGCATGCTGCATCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTCGTATACTGGACTGCGACATGGTCATGGACACAAGTTACATTTCAACTCCAAGTTATGATGTGGGAAACCGGAGTGGCCGACTCTGGTCGGAGCCGCTGCAGAGGCAGCACCATTACAGGGGTCCTCTGTTAGAGGAGTCACTTGAATCATTCAGTGGGAAGCTATCTCTTGACAAA 978 0.4571 YVELELATGGFSEANFLAEGDLDPFTEGFYRMDKSLLSSNINWLVEVLSCVQHQNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWAAWQKIAIGAARGLRYLHEDCRVGCIIHRDMRPNNILITHDFEPLVGDFGLVRWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVIGRKAVDLTRPKGQQCLTKWAQPLLEEYAIEELIDPRLGNQYLENEVYCMLHAASLCIRRDPHSRPRMSQVLRILDCDMVMDTSYISTPSYDVGNRSGRLWSEPLQRQHHYRGPLLEESLESFSGKLSLDK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1859 326 Gene3D Phosphorylase Kinase; domain 1 32 76 - -
Amo12g1859 326 SUPERFAMILY Protein kinase-like (PK-like) 5 274 IPR011009 -
Amo12g1859 326 Pfam Protein kinase domain 45 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1859 326 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 45 324 - -
Amo12g1859 326 ProSiteProfiles Protein kinase domain profile. 1 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g1859 326 ProSitePatterns Tyrosine protein kinases specific active-site signature. 121 133 IPR008266 GO:0004672|GO:0006468
Amo12g1859 326 PANTHER INACTIVE PROTEIN KINASE SELMODRAFT_444075 45 324 - -
Amo12g1859 326 Gene3D Transferase(Phosphotransferase) domain 1 77 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1859 Amo-Chr12 88497497 88499501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1859 1 276 Trihelix Transcription Factor Family AT1G70460 47.260 5.48e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo12g1859 Pkinase 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1859 - - ahf:112783851 577.015