Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1825 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAACCCTCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAATTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACCTCATCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCATTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACAACCGGAACGTTCCGGTTTCCCGGCGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCCGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTTGCGAATCGGCGAAGCAGATCCCGTGTAAGCACATATACCATTCCGATTGCATCTTGCCGTGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTGCCCCAGTGAACCGGTCTGTGGGAGCAGGCGGTTCAGCTGAATCCTCTGATGGAAGTGGTGGTGGTGTTGGCGGTGACAATGATGGCGGGGATAATAGGCAAACGTTGGAGAGGAGGGTGTTTAGGGTTTCTTTGCCGTGGCCGTTTAGGCAATTCGGTGGCTCTCCTGCGGAGACGAGCAATGTTGGGAACAACAGCAACAACAACAGTGGCGGCGGCAACAACAACAGTGGGCAATCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCGGAGACGAGACAAGAAGATCTTGATTGA 1098 0.5674 MSSSGGVTSGNPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNLINPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLCESAKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAGGSAESSDGSGGGVGGDNDGGDNRQTLERRVFRVSLPWPFRQFGGSPAETSNVGNNSNNNSGGGNNNSGQSNSESRGNRNFESETRQEDLD* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1825 365 MobiDBLite consensus disorder prediction 319 352 - -
Amo12g1825 365 CDD RING-H2_RNF126_like 201 243 - -
Amo12g1825 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 8 325 - -
Amo12g1825 365 SUPERFAMILY RING/U-box 186 249 - -
Amo12g1825 365 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Amo12g1825 365 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Amo12g1825 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 325 - -
Amo12g1825 365 SMART ring_2 202 242 IPR001841 -
Amo12g1825 365 MobiDBLite consensus disorder prediction 253 298 - -
Amo12g1825 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Amo12g1825 365 Pfam Zinc finger, C3HC4 type (RING finger) 201 242 - -
Amo12g1825 365 MobiDBLite consensus disorder prediction 312 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1825 Amo-Chr12 87186949 87190497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1825 160 256 C3H Transcription Factor Family AT5G15820 56.701 5.61e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1825 - K11982 gmx:100784504 409.453